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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310046 (15 seq.)
>W1711081270
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22213
22140
-
Arg
TCT
[ENA]
¡û
>WENV171003658
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2010
1937
-
Arg
TCT
[ENA]
¡û
>PL191000531
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19964
19891
-
Arg
TCT
[ENA]
¡û
>C181137728
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438277
4438350
+
Arg
TCT
-
¡û
>W1910646691
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23373
23300
-
Arg
TCT
[ENA]
¡û
>W1911118844
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20672
20745
+
Arg
TCT
[ENA]
¡û
>PL201000420
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
87793
87720
-
Arg
TCT
[ENA]
¡û
>PL201000440
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
3903
3830
-
Arg
TCT
[ENA]
¡û
>PL201000730
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37290
37363
+
Arg
TCT
[ENA]
¡û
>W2010791999
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23373
23300
-
Arg
TCT
[ENA]
¡û
>W2011012095
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20672
20745
+
Arg
TCT
[ENA]
¡û
>W2110232127
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51740
51813
+
Arg
TCT
[ENA]
¡û
>W2110312915
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27550
27623
+
Arg
TCT
[ENA]
¡û
>W2110781115
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
20985
21058
+
Arg
TCT
[ENA]
¡û
>W2110781133
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41692
41619
-
Arg
TCT
[ENA]
¡û
Identical group No.322706 (7 seq.)
>PL201000860
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
21970
21895
-
Arg
TCT
[ENA]
¡û
>W2010745209
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55994
56069
+
Arg
TCT
[ENA]
¡û
>W2010745405
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10866
10941
+
Arg
TCT
[ENA]
¡û
>W2010745515
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9801
9876
+
Arg
TCT
[ENA]
¡û
>W2011750686
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
63170
63095
-
Arg
TCT
[ENA]
¡û
>W2110230658
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
32259
32186
-
Arg
TCT
[ENA]
¡û
>C201083665
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4532531
4532456
-
Arg
TCT
-
¡û
Identical group No.452493 (9 seq.)
>W1711711314
MTAV01000014
Cyanobacteriota
Nostoc sp. T09 [MTAV]
89663
89589
-
Arg
TCT
[ENA]
¡û
>PL171000525
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
595
521
-
Arg
TCT
[ENA]
¡û
>PL201000456
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
41936
41864
-
Arg
TCT
[ENA]
¡û
>W2110229588
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
56666
56738
+
Arg
TCT
[ENA]
¡û
>W2110312545
JADEXL010000117
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
3780
3708
-
Arg
TCT
[ENA]
¡û
>C231097687
CP063785
Cyanobacteriota
Tolypothrix sp. PCC 7712 [CP063785]
3916248
3916176
-
Arg
TCT
-
¡û
>C231103001
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
647666
647738
+
Arg
TCT
-
¡û
>W1610003548
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
29907
29835
-
Arg
TCT
[ENA]
¡û
>W1710004168
AGCR01000038
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
29907
29835
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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