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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112856 (14 seq.)
>PL191000454
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615538
615454
-
Ser
TGA
[ENA]
¡û
>PL191000533
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19724
19640
-
Ser
TGA
[ENA]
¡û
>PL201000459
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
41697
41613
-
Ser
TGA
[ENA]
¡û
>W2010745212
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
56235
56318
+
Ser
TGA
[ENA]
¡û
>W2010745408
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
11107
11190
+
Ser
TGA
[ENA]
¡û
>W2011750688
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
62924
62840
-
Ser
TGA
[ENA]
¡û
>W2110232129
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51985
52069
+
Ser
TGA
[ENA]
¡û
>W2110233115
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
25175
25091
-
Ser
TGA
[ENA]
¡û
>W2110233183
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
23407
23323
-
Ser
TGA
[ENA]
¡û
>W2110312526
JADEXL010000099
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
1033
1115
+
Ser
TGA
[ENA]
¡û
>C201083668
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4532290
4532207
-
Ser
TGA
-
¡û
>W2110781117
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
21224
21308
+
Ser
TGA
[ENA]
¡û
>W2110781136
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41452
41368
-
Ser
TGA
[ENA]
¡û
>W2130044901
WBKN01000816
Cyanobacteriota
Nostoc commune BAE [WBKN]
16631
16715
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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