This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306748 (13 seq.)
>WENV171003659
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
1932
1858
-
Ala
TGC
[ENA]
¡û
>PL191000532
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
19886
19812
-
Ala
TGC
[ENA]
¡û
>C181137729
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4438355
4438429
+
Ala
TGC
-
¡û
>W1910646692
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23295
23221
-
Ala
TGC
[ENA]
¡û
>W1911118845
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20750
20824
+
Ala
TGC
[ENA]
¡û
>PL201000441
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
3825
3751
-
Ala
TGC
[ENA]
¡û
>PL201000731
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37368
37442
+
Ala
TGC
[ENA]
¡û
>W2010792000
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23295
23221
-
Ala
TGC
[ENA]
¡û
>W2011012096
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20750
20824
+
Ala
TGC
[ENA]
¡û
>W2110232128
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51818
51892
+
Ala
TGC
[ENA]
¡û
>W2110312916
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
27628
27702
+
Ala
TGC
[ENA]
¡û
>W2110781116
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
21063
21137
+
Ala
TGC
[ENA]
¡û
>W2110781134
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41614
41540
-
Ala
TGC
[ENA]
¡û
Identical group No.336101 (1 seq.)
>PL201000421
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
87715
87641
-
Ala
TGC
[ENA]
¡û
Identical group No.399773 (5 seq.)
>PL171000183
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
102904
102978
+
Ala
TGC
[ENA]
¡û
>PL201000861
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
21891
21817
-
Ala
TGC
[ENA]
¡û
>W2110312524
JADEXL010000099
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
871
945
+
Ala
TGC
[ENA]
¡û
>W1610003577
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
989
1063
+
Ala
TGC
[ENA]
¡û
>W1710004197
AGCR01000096
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
989
1063
+
Ala
TGC
[ENA]
¡û
Identical group No.530316 (35 seq.)
>W1711081271
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
22135
22062
-
Ala
TGC
[ENA]
¡û
>PL171000206
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
12144
12217
+
Ala
TGC
[ENA]
¡û
>W141038488
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
55806
55733
-
Ala
TGC
[ENA]
¡û
>W141038533
ALVX01000037
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
68792
68719
-
Ala
TGC
[ENA]
¡û
>PL191000453
CP024793
Cyanobacteria
Nostoc flagelliforme CCNUN1 plasmid:pNFSY08 (CP024793)
615705
615632
-
Ala
TGC
[ENA]
¡û
>W1910596241
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27469
27542
+
Ala
TGC
[ENA]
¡û
>W1910596325
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W1910596406
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W1910596488
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W1910596568
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27461
27534
+
Ala
TGC
[ENA]
¡û
>W1910596639
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24803
24730
-
Ala
TGC
[ENA]
¡û
>W1910596716
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W1910596784
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28650
28723
+
Ala
TGC
[ENA]
¡û
>W1910596860
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27452
27525
+
Ala
TGC
[ENA]
¡û
>W1910596972
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27690
27763
+
Ala
TGC
[ENA]
¡û
>W1910597018
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29373
29446
+
Ala
TGC
[ENA]
¡û
>W1910597143
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27453
27526
+
Ala
TGC
[ENA]
¡û
>W1910597239
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57090
57163
+
Ala
TGC
[ENA]
¡û
>PL201000457
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
41859
41786
-
Ala
TGC
[ENA]
¡û
>W2010766584
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27469
27542
+
Ala
TGC
[ENA]
¡û
>W2010766668
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W2010766749
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27470
27543
+
Ala
TGC
[ENA]
¡û
>W2010766831
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W2010766911
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27461
27534
+
Ala
TGC
[ENA]
¡û
>W2010766982
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
24803
24730
-
Ala
TGC
[ENA]
¡û
>W2010767059
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27468
27541
+
Ala
TGC
[ENA]
¡û
>W2010767127
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28650
28723
+
Ala
TGC
[ENA]
¡û
>W2010767203
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27452
27525
+
Ala
TGC
[ENA]
¡û
>W2010767315
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27690
27763
+
Ala
TGC
[ENA]
¡û
>W2010767361
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29373
29446
+
Ala
TGC
[ENA]
¡û
>W2010767486
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27453
27526
+
Ala
TGC
[ENA]
¡û
>W2010767582
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
57090
57163
+
Ala
TGC
[ENA]
¡û
>W2110233114
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
25342
25269
-
Ala
TGC
[ENA]
¡û
>W2110233182
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
23574
23501
-
Ala
TGC
[ENA]
¡û
>W2110311159
JADEWI010000041
Cyanobacteriota
Nostoc sp. LEGE 06077 [JADEWI]
1110
1037
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK