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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306746 (18 seq.)
>PL171000178
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100570
100645
+
Pro
TGG
[ENA]
¡û
>W141038483
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
56468
56393
-
Pro
TGG
[ENA]
¡û
>PL191000525
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20441
20366
-
Pro
TGG
[ENA]
¡û
>W1910646685
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23932
23857
-
Pro
TGG
[ENA]
¡û
>W1911118838
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20195
20270
+
Pro
TGG
[ENA]
¡û
>PL201000434
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4380
4305
-
Pro
TGG
[ENA]
¡û
>PL201000451
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42703
42628
-
Pro
TGG
[ENA]
¡û
>PL201000724
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36731
36806
+
Pro
TGG
[ENA]
¡û
>W2010745203
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55517
55592
+
Pro
TGG
[ENA]
¡û
>W2010745399
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10389
10464
+
Pro
TGG
[ENA]
¡û
>W2010745509
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9324
9399
+
Pro
TGG
[ENA]
¡û
>W2010791993
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23932
23857
-
Pro
TGG
[ENA]
¡û
>W2011012089
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20195
20270
+
Pro
TGG
[ENA]
¡û
>W2110230652
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
32794
32719
-
Pro
TGG
[ENA]
¡û
>W2110232121
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51262
51337
+
Pro
TGG
[ENA]
¡û
>W2110312566
JADEXL010000460
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
325
250
-
Pro
TGG
[ENA]
¡û
>W1610003572
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2123
2198
+
Pro
TGG
[ENA]
¡û
>W1710004192
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2123
2198
+
Pro
TGG
[ENA]
¡û
Identical group No.336099 (2 seq.)
>PL201000412
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88509
88433
-
Pro
TGG
[ENA]
¡û
>C201083657
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533259
4533183
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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