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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326688 (5 seq.)
>W1910646688
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23610
23537
-
Thr
TGT
[ENA]
¡û
>PL201000417
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88030
87957
-
Thr
TGT
[ENA]
¡û
>PL201000727
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37053
37126
+
Thr
TGT
[ENA]
¡û
>W2010791996
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23610
23537
-
Thr
TGT
[ENA]
¡û
>W2110232124
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51503
51576
+
Thr
TGT
[ENA]
¡û
Identical group No.483990 (2 seq.)
>PL171000109
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23046
23119
+
Thr
TGT
[ENA]
¡û
>PL201000455
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42290
42217
-
Thr
TGT
[ENA]
¡û
Identical group No.509011 (36 seq.)
>WENV171003378
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
12289
12364
+
Thr
TGT
[ENA]
¡û
>PL191000528
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20200
20128
-
Thr
TGT
[ENA]
¡û
>W1910596237
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27154
27226
+
Thr
TGT
[ENA]
¡û
>W1910596321
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596402
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596484
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596564
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27146
27218
+
Thr
TGT
[ENA]
¡û
>W1910596635
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25118
25046
-
Thr
TGT
[ENA]
¡û
>W1910596712
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596780
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28335
28407
+
Thr
TGT
[ENA]
¡û
>W1910596856
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27137
27209
+
Thr
TGT
[ENA]
¡û
>W1910596968
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27375
27447
+
Thr
TGT
[ENA]
¡û
>W1910597014
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29058
29130
+
Thr
TGT
[ENA]
¡û
>W1910597139
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27138
27210
+
Thr
TGT
[ENA]
¡û
>W1910597235
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56775
56847
+
Thr
TGT
[ENA]
¡û
>W1911118841
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20436
20508
+
Thr
TGT
[ENA]
¡û
>PL201000437
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4139
4067
-
Thr
TGT
[ENA]
¡û
>W2010745206
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55758
55830
+
Thr
TGT
[ENA]
¡û
>W2010745402
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10630
10702
+
Thr
TGT
[ENA]
¡û
>W2010745512
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9565
9637
+
Thr
TGT
[ENA]
¡û
>W2010766580
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27154
27226
+
Thr
TGT
[ENA]
¡û
>W2010766664
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W2010766745
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W2010766827
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W2010766907
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27146
27218
+
Thr
TGT
[ENA]
¡û
>W2010766978
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25118
25046
-
Thr
TGT
[ENA]
¡û
>W2010767055
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W2010767123
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28335
28407
+
Thr
TGT
[ENA]
¡û
>W2010767199
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27137
27209
+
Thr
TGT
[ENA]
¡û
>W2010767311
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27375
27447
+
Thr
TGT
[ENA]
¡û
>W2010767357
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29058
29130
+
Thr
TGT
[ENA]
¡û
>W2010767482
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27138
27210
+
Thr
TGT
[ENA]
¡û
>W2010767578
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56775
56847
+
Thr
TGT
[ENA]
¡û
>W2011012092
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20436
20508
+
Thr
TGT
[ENA]
¡û
>C201083662
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4532768
4532696
-
Thr
TGT
-
¡û
>W2110781130
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41929
41857
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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