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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208604 (5 seq.)
>W1910646688
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23610
23537
-
Thr
TGT
[ENA]
¡û
>PL201000417
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88030
87957
-
Thr
TGT
[ENA]
¡û
>PL201000727
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
37053
37126
+
Thr
TGT
[ENA]
¡û
>W2010791996
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23610
23537
-
Thr
TGT
[ENA]
¡û
>W2110232124
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51503
51576
+
Thr
TGT
[ENA]
¡û
Identical group No.254956 (3 seq.)
>PL171000109
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
23046
23119
+
Thr
TGT
[ENA]
¡û
>PL201000455
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42290
42217
-
Thr
TGT
[ENA]
¡û
>C201085201
CP040297
Cyanobacteriota
Nostoc sp. TCL26-01 [CP040297]
3024508
3024581
+
Thr
TGT
-
¡û
Identical group No.324027 (98 seq.)
>W1711335771
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496528
496603
+
Thr
TGT
[ENA]
¡û
>w002276
AAAY02000028
Cyanobacteriota
Nostoc punctiforme [AAAY]
11629
11704
+
Thr
TGT
[ENA]
¡û
>C08006947
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
3440378
3440306
-
Thr
TGT
[Ensembl]
¡û
>WENV171003086
NNBT01000427
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
70
142
+
Thr
TGT
[ENA]
¡û
>WENV171003148
NNBT01001888
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
896
968
+
Thr
TGT
[ENA]
¡û
>WENV171003378
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
12289
12364
+
Thr
TGT
[ENA]
¡û
>WENV171003456
NNBU01000031
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
30537
30465
-
Thr
TGT
[ENA]
¡û
>WENV171003739
NNBV01000559
[NNBV] plant metagenome; symbiotic tissue sample KVS11
4262
4334
+
Thr
TGT
[ENA]
¡û
>PL191000528
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20200
20128
-
Thr
TGT
[ENA]
¡û
>C181137838
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5265894
5265822
-
Thr
TGT
-
¡û
>C191083033
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3881909
3881981
+
Thr
TGT
-
¡û
>W1910596205
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
22409
22337
-
Thr
TGT
[ENA]
¡û
>W1910596237
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27154
27226
+
Thr
TGT
[ENA]
¡û
>W1910596296
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
22373
22301
-
Thr
TGT
[ENA]
¡û
>W1910596321
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596353
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
248564
248492
-
Thr
TGT
[ENA]
¡û
>W1910596402
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W1910596429
LAHA01000001
Cyanobacteriota
Nostoc linckia z4 [LAHA]
240223
240151
-
Thr
TGT
[ENA]
¡û
>W1910596484
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596534
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
22281
22209
-
Thr
TGT
[ENA]
¡û
>W1910596564
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27146
27218
+
Thr
TGT
[ENA]
¡û
>W1910596604
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
35658
35586
-
Thr
TGT
[ENA]
¡û
>W1910596635
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25118
25046
-
Thr
TGT
[ENA]
¡û
>W1910596687
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
14465
14393
-
Thr
TGT
[ENA]
¡û
>W1910596712
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W1910596780
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28335
28407
+
Thr
TGT
[ENA]
¡û
>W1910596806
LAHE01000059
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28688
28760
+
Thr
TGT
[ENA]
¡û
>W1910596856
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27137
27209
+
Thr
TGT
[ENA]
¡û
>W1910596880
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
14427
14355
-
Thr
TGT
[ENA]
¡û
>W1910596947
LAHG01000042
Cyanobacteriota
Nostoc linckia z14 [LAHG]
22382
22310
-
Thr
TGT
[ENA]
¡û
>W1910596968
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27375
27447
+
Thr
TGT
[ENA]
¡û
>W1910597014
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29058
29130
+
Thr
TGT
[ENA]
¡û
>W1910597043
LAHH01000043
Cyanobacteriota
Nostoc linckia z15 [LAHH]
2154
2082
-
Thr
TGT
[ENA]
¡û
>W1910597117
LAHI01000046
Cyanobacteriota
Nostoc linckia z16 [LAHI]
16758
16686
-
Thr
TGT
[ENA]
¡û
>W1910597139
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27138
27210
+
Thr
TGT
[ENA]
¡û
>W1910597214
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
14541
14469
-
Thr
TGT
[ENA]
¡û
>W1910597235
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56775
56847
+
Thr
TGT
[ENA]
¡û
>W1910646669
LWSY01000156
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
532
460
-
Thr
TGT
[ENA]
¡û
>W1910792666
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
21678
21750
+
Thr
TGT
[ENA]
¡û
>W1911118686
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12001
11929
-
Thr
TGT
[ENA]
¡û
>W1911118723
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
467595
467523
-
Thr
TGT
[ENA]
¡û
>PL201000437
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4139
4067
-
Thr
TGT
[ENA]
¡û
>W2010745206
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55758
55830
+
Thr
TGT
[ENA]
¡û
>W2010745402
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10630
10702
+
Thr
TGT
[ENA]
¡û
>W2010766548
LAGX01000040
Cyanobacteriota
Nostoc linckia z1 [LAGX]
22409
22337
-
Thr
TGT
[ENA]
¡û
>W2010766580
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
27154
27226
+
Thr
TGT
[ENA]
¡û
>W2010766639
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
22373
22301
-
Thr
TGT
[ENA]
¡û
>W2010766664
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W2010766696
LAGZ01000007
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
248564
248492
-
Thr
TGT
[ENA]
¡û
>W2010766745
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
27155
27227
+
Thr
TGT
[ENA]
¡û
>W2010766772
LAHA01000001
Cyanobacteriota
Nostoc linckia z4 [LAHA]
240223
240151
-
Thr
TGT
[ENA]
¡û
>W2010766827
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W2010766877
LAHB01000038
Cyanobacteriota
Nostoc linckia z6 [LAHB]
22281
22209
-
Thr
TGT
[ENA]
¡û
>W2010766907
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
27146
27218
+
Thr
TGT
[ENA]
¡û
>W2010766947
LAHC01000031
Cyanobacteriota
Nostoc linckia z7 [LAHC]
35658
35586
-
Thr
TGT
[ENA]
¡û
>W2010766978
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25118
25046
-
Thr
TGT
[ENA]
¡û
>W2010767030
LAHD01000032
Cyanobacteriota
Nostoc linckia z8 [LAHD]
14465
14393
-
Thr
TGT
[ENA]
¡û
>W2010767055
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
27153
27225
+
Thr
TGT
[ENA]
¡û
>W2010767123
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28335
28407
+
Thr
TGT
[ENA]
¡û
>W2010767149
LAHE01000059
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28688
28760
+
Thr
TGT
[ENA]
¡û
>W2010767199
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
27137
27209
+
Thr
TGT
[ENA]
¡û
>W2010767223
LAHF01000062
Cyanobacteriota
Nostoc linckia z13 [LAHF]
14427
14355
-
Thr
TGT
[ENA]
¡û
>W2010767290
LAHG01000042
Cyanobacteriota
Nostoc linckia z14 [LAHG]
22382
22310
-
Thr
TGT
[ENA]
¡û
>W2010767311
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27375
27447
+
Thr
TGT
[ENA]
¡û
>W2010767357
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
29058
29130
+
Thr
TGT
[ENA]
¡û
>W2010767386
LAHH01000043
Cyanobacteriota
Nostoc linckia z15 [LAHH]
2154
2082
-
Thr
TGT
[ENA]
¡û
>W2010767460
LAHI01000046
Cyanobacteriota
Nostoc linckia z16 [LAHI]
16758
16686
-
Thr
TGT
[ENA]
¡û
>W2010767482
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
27138
27210
+
Thr
TGT
[ENA]
¡û
>W2010767557
LAHJ01000046
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
14541
14469
-
Thr
TGT
[ENA]
¡û
>W2010767578
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56775
56847
+
Thr
TGT
[ENA]
¡û
>W2010791977
LWSY01000156
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
532
460
-
Thr
TGT
[ENA]
¡û
>W2010901128
MRBZ01000030
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
21678
21750
+
Thr
TGT
[ENA]
¡û
>W2011011937
NOLI01000126
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
12001
11929
-
Thr
TGT
[ENA]
¡û
>W2011011974
NOLJ01000001
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
467595
467523
-
Thr
TGT
[ENA]
¡û
>W2011012092
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20436
20508
+
Thr
TGT
[ENA]
¡û
>W2110203468
JACERF010000004
Cyanobacteriota
Desmonostoc muscorum CCALA 125 [JACERF]
75843
75915
+
Thr
TGT
[ENA]
¡û
>W2110229824
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41822
41894
+
Thr
TGT
[ENA]
¡û
>W2110231947
JACJSD010000033
Cyanobacteriota
Nostoc sp. FACHB-280 [JACJSD]
15989
16064
+
Thr
TGT
[ENA]
¡û
>W2110232222
JACJSJ010000047
Cyanobacteriota
Nostoc sp. FACHB-973 [JACJSJ]
16892
16820
-
Thr
TGT
[ENA]
¡û
>W2110233042
JACJTC010000023
Cyanobacteriota
Nostoc punctiforme FACHB-252 [JACJTC]
62708
62780
+
Thr
TGT
[ENA]
¡û
>W2110233110
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
25660
25588
-
Thr
TGT
[ENA]
¡û
>W2110233178
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
23892
23820
-
Thr
TGT
[ENA]
¡û
>W2110233411
JACJTK010000010
Cyanobacteriota
Nostoc sp. FACHB-857 [JACJTK]
226629
226557
-
Thr
TGT
[ENA]
¡û
>W2110233812
JACJTU010000009
Cyanobacteriota
Nostoc paludosum FACHB-159 [JACJTU]
226713
226641
-
Thr
TGT
[ENA]
¡û
>W2110312849
JADEXS010000054
Cyanobacteriota
Desmonostoc muscorum LEGE 12446 [JADEXS]
16497
16425
-
Thr
TGT
[ENA]
¡û
>W2110312971
JADEXV010000097
Cyanobacteriota
Nostocales cyanobacterium LEGE 12452 [JADEXV]
10720
10792
+
Thr
TGT
[ENA]
¡û
>C201083633
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
5802447
5802375
-
Thr
TGT
-
¡û
>C201083662
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4532768
4532696
-
Thr
TGT
-
¡û
>C211283924
CP071065
Cyanobacteriota
Nostoc sp. UHCC 0702 [CP071065]
1310568
1310643
+
Thr
TGT
-
¡û
>C231601395
CP117768
Cyanobacteriota
Nostoc sp. UHCC 0926 [CP117768]
6476522
6476450
-
Thr
TGT
-
¡û
>W2110781130
WBKM01000207
Cyanobacteriota
Nostoc sp. WHI [WBKM]
41929
41857
-
Thr
TGT
[ENA]
¡û
>C241051294
CP040272
Cyanobacteriota
Nostoc sp. C052 [CP040272]
3552540
3552614
+
Thr
TGT
-
¡û
>C241051362
CP040281
Cyanobacteriota
Nostoc sp. C057 [CP040281]
6527728
6527656
-
Thr
TGT
-
¡û
>C241093468
CP045226
Cyanobacteriota
Nostoc sphaeroides CCNUC1 [CP045226, CP045227, CP045228, CP045229, CP045230, CP045231, CP045232, CP045233, CP045234]
4407165
4407093
-
Thr
TGT
-
¡û
>C241112563
CP046703
Cyanobacteriota
Nostoc sp. ATCC 53789 [CP046703]
5877636
5877564
-
Thr
TGT
-
¡û
>W2130019920
JADEXU010000139
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
11023
10951
-
Thr
TGT
[ENA]
¡û
>C131004185
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3485608
3485533
-
Thr
TGT
[Ensembl]
¡û
>W1611066478
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
496528
496603
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK