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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326679 (42 seq.)
>W1711081260
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23676
23600
-
Gln
TTG
[ENA]
¡û
>W141021308
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19665
19591
-
Gln
TTG
[ENA]
¡û
>WENV171003649
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2901
2825
-
Gln
TTG
[ENA]
¡û
>PL191000012
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73676
73751
+
Gln
TTG
[ENA]
¡û
>C181137724
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437859
4437933
+
Gln
TTG
-
¡û
>W1910596229
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26402
26477
+
Gln
TTG
[ENA]
¡û
>W1910596313
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596394
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596476
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596556
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26394
26469
+
Gln
TTG
[ENA]
¡û
>W1910596627
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25870
25795
-
Gln
TTG
[ENA]
¡û
>W1910596704
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596772
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27583
27658
+
Gln
TTG
[ENA]
¡û
>W1910596848
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26385
26460
+
Gln
TTG
[ENA]
¡û
>W1910596960
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26623
26698
+
Gln
TTG
[ENA]
¡û
>W1910597006
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28306
28381
+
Gln
TTG
[ENA]
¡û
>W1910597131
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26386
26461
+
Gln
TTG
[ENA]
¡û
>W1910597227
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56023
56098
+
Gln
TTG
[ENA]
¡û
>W1911218650
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9686
9612
-
Gln
TTG
[ENA]
¡û
>PL201000410
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88671
88597
-
Gln
TTG
[ENA]
¡û
>W2010766572
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26402
26477
+
Gln
TTG
[ENA]
¡û
>W2010766656
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W2010766737
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W2010766819
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W2010766899
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26394
26469
+
Gln
TTG
[ENA]
¡û
>W2010766970
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25870
25795
-
Gln
TTG
[ENA]
¡û
>W2010767047
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W2010767115
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27583
27658
+
Gln
TTG
[ENA]
¡û
>W2010767191
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26385
26460
+
Gln
TTG
[ENA]
¡û
>W2010767303
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26623
26698
+
Gln
TTG
[ENA]
¡û
>W2010767349
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28306
28381
+
Gln
TTG
[ENA]
¡û
>W2010767474
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26386
26461
+
Gln
TTG
[ENA]
¡û
>W2010767570
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56023
56098
+
Gln
TTG
[ENA]
¡û
>W2011063544
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9686
9612
-
Gln
TTG
[ENA]
¡û
>W2011750678
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
64180
64105
-
Gln
TTG
[ENA]
¡û
>W2110231729
JACJRZ010000017
Cyanobacteriota
Fischerella sp. FACHB-380 [JACJRZ]
91810
91884
+
Gln
TTG
[ENA]
¡û
>W2110232169
JACJSI010000042
Cyanobacteriota
Nostoc flagelliforme FACHB-838 [JACJSI]
34037
34112
+
Gln
TTG
[ENA]
¡û
>W2110233107
JACJTD010000050
Cyanobacteriota
Nostoc foliaceum FACHB-393 [JACJTD]
26267
26192
-
Gln
TTG
[ENA]
¡û
>W2110233175
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
24499
24424
-
Gln
TTG
[ENA]
¡û
>W2110311150
JADEWI010000041
Cyanobacteriota
Nostoc sp. LEGE 06077 [JADEWI]
2136
2062
-
Gln
TTG
[ENA]
¡û
>W2110312904
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26575
26649
+
Gln
TTG
[ENA]
¡û
>C201083655
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533421
4533347
-
Gln
TTG
-
¡û
Identical group No.399615 (3 seq.)
>PL191000389
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2734
2659
-
Gln
TTG
[ENA]
¡û
>PL201000449
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42945
42869
-
Gln
TTG
[ENA]
¡û
>W2110229817
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41076
41151
+
Gln
TTG
[ENA]
¡û
Identical group No.509009 (11 seq.)
>PL191000524
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20520
20446
-
Gln
TTG
[ENA]
¡û
>W1910646684
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24011
23937
-
Gln
TTG
[ENA]
¡û
>W1911118837
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20116
20190
+
Gln
TTG
[ENA]
¡û
>PL201000433
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4459
4385
-
Gln
TTG
[ENA]
¡û
>PL201000723
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36652
36726
+
Gln
TTG
[ENA]
¡û
>W2010745202
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55438
55512
+
Gln
TTG
[ENA]
¡û
>W2010745398
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10310
10384
+
Gln
TTG
[ENA]
¡û
>W2010745508
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9245
9319
+
Gln
TTG
[ENA]
¡û
>W2010791992
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24011
23937
-
Gln
TTG
[ENA]
¡û
>W2011012088
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20116
20190
+
Gln
TTG
[ENA]
¡û
>W2110232120
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51183
51257
+
Gln
TTG
[ENA]
¡û
Identical group No.667172 (1 seq.)
>PL201000857
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22285
22211
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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