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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209960 (9 seq.)
>W1710882499
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1728
1803
+
Gln
TTG
[ENA]
¡û
>W1711081260
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23676
23600
-
Gln
TTG
[ENA]
¡û
>WENV180381356
OBOR01252895
[OBOR] marine metagenome; ENVO 00002227
228
304
+
Gln
TTG
[ENA]
¡û
>W141150848
AXAQ01000168
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
1866
1941
+
Gln
TTG
[ENA]
¡û
>PL201000410
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88671
88597
-
Gln
TTG
[ENA]
¡û
>W2010149014
CAACVJ010000598
Cyanobacteriota
Hyella patelloides LEGE 07179 [CAACVJ]
7424
7348
-
Gln
TTG
[ENA]
¡û
>W2010767191
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26385
26460
+
Gln
TTG
[ENA]
¡û
>W1511343994
JRFE01000043
Cyanobacteriota
Myxosarcina sp. GI1 [JRFE]
31735
31659
-
Gln
TTG
[ENA]
¡û
>W1610744425
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1728
1803
+
Gln
TTG
[ENA]
¡û
Identical group No.229346 (43 seq.)
>W131058327
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4839912
4839988
+
Gln
TTG
[ENA]
¡û
>WENV180015516
FQKF010785384
[FQKF] soil metagenome; Soil
131
56
-
Gln
TTG
[ENA]
¡û
>W141021308
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19665
19591
-
Gln
TTG
[ENA]
¡û
>WENV171003649
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2901
2825
-
Gln
TTG
[ENA]
¡û
>PL191000012
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
73676
73751
+
Gln
TTG
[ENA]
¡û
>PL191000389
CP023279
Cyanobacteria
Nostoc sp. CENA543 plasmid:pCENA543c (CP023279)
2734
2659
-
Gln
TTG
[ENA]
¡û
>C181137724
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437859
4437933
+
Gln
TTG
-
¡û
>W1910596229
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26402
26477
+
Gln
TTG
[ENA]
¡û
>W1910596313
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596394
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W1910596476
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596556
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26394
26469
+
Gln
TTG
[ENA]
¡û
>W1910596627
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25870
25795
-
Gln
TTG
[ENA]
¡û
>W1910596704
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W1910596772
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27583
27658
+
Gln
TTG
[ENA]
¡û
>W1910596848
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26385
26460
+
Gln
TTG
[ENA]
¡û
>W1910596960
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26623
26698
+
Gln
TTG
[ENA]
¡û
>W1910597006
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28306
28381
+
Gln
TTG
[ENA]
¡û
>W1910597131
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26386
26461
+
Gln
TTG
[ENA]
¡û
>W1910597227
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56023
56098
+
Gln
TTG
[ENA]
¡û
>W1911218650
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9686
9612
-
Gln
TTG
[ENA]
¡û
>PL201000449
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42945
42869
-
Gln
TTG
[ENA]
¡û
>W2010766572
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26402
26477
+
Gln
TTG
[ENA]
¡û
>W2010766656
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W2010766737
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26403
26478
+
Gln
TTG
[ENA]
¡û
>W2010766819
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W2010766899
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26394
26469
+
Gln
TTG
[ENA]
¡û
>W2010766970
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25870
25795
-
Gln
TTG
[ENA]
¡û
>W2010767047
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26401
26476
+
Gln
TTG
[ENA]
¡û
>W2010767115
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
27583
27658
+
Gln
TTG
[ENA]
¡û
>W2010767303
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26623
26698
+
Gln
TTG
[ENA]
¡û
>W2010767349
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28306
28381
+
Gln
TTG
[ENA]
¡û
>W2010767474
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26386
26461
+
Gln
TTG
[ENA]
¡û
>W2010767570
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56023
56098
+
Gln
TTG
[ENA]
¡û
>W2011063544
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9686
9612
-
Gln
TTG
[ENA]
¡û
>W2011750678
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
64180
64105
-
Gln
TTG
[ENA]
¡û
>W2110229817
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41076
41151
+
Gln
TTG
[ENA]
¡û
>W2110231571
JACJRV010000056
Cyanobacteriota
Nostoc sp. FACHB-152 [JACJRV]
27525
27450
-
Gln
TTG
[ENA]
¡û
>W2110233175
JACJTE010000052
Cyanobacteriota
Nostoc linckia FACHB-391 [JACJTE]
24499
24424
-
Gln
TTG
[ENA]
¡û
>W2110311150
JADEWI010000041
Cyanobacteriota
Nostoc sp. LEGE 06077 [JADEWI]
2136
2062
-
Gln
TTG
[ENA]
¡û
>W2110312904
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26575
26649
+
Gln
TTG
[ENA]
¡û
>C201083655
CP040094
Cyanobacteriota
Nostoc sp. TCL240-02 [CP040094]
4533421
4533347
-
Gln
TTG
-
¡û
>W2110781105
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
19977
20052
+
Gln
TTG
[ENA]
¡û
Identical group No.310043 (28 seq.)
>W1711711385
MTAW01000169
Cyanobacteriota
Nostoc sp. 106C [MTAW]
17260
17335
+
Gln
TTG
[ENA]
¡û
>W1711711449
MTAX01000103
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
24255
24330
+
Gln
TTG
[ENA]
¡û
>PL171000123
AP018211
Cyanobacteria
Calothrix brevissima NIES-22 plasmid:plasmid4
171237
171163
-
Gln
TTG
[ENA]
¡û
>PL171000177
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100491
100565
+
Gln
TTG
[ENA]
¡û
>PL191000524
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20520
20446
-
Gln
TTG
[ENA]
¡û
>C181004789
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1810696
1810621
-
Gln
TTG
-
¡û
>W1910646684
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24011
23937
-
Gln
TTG
[ENA]
¡û
>W1911118837
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20116
20190
+
Gln
TTG
[ENA]
¡û
>PL201000433
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4459
4385
-
Gln
TTG
[ENA]
¡û
>PL201000723
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36652
36726
+
Gln
TTG
[ENA]
¡û
>PL201000857
CP050441
Cyanobacteriota
Tolypothrix sp. PCC 7910 plasmid:unnamed1 [CP050441]
22285
22211
-
Gln
TTG
[ENA]
¡û
>W2010745202
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55438
55512
+
Gln
TTG
[ENA]
¡û
>W2010745398
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10310
10384
+
Gln
TTG
[ENA]
¡û
>W2010745508
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9245
9319
+
Gln
TTG
[ENA]
¡û
>W2010791992
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
24011
23937
-
Gln
TTG
[ENA]
¡û
>W2011012088
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20116
20190
+
Gln
TTG
[ENA]
¡û
>W2110229397
JACJQF010000031
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
43841
43766
-
Gln
TTG
[ENA]
¡û
>W2110229578
JACJQI010000039
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
55701
55776
+
Gln
TTG
[ENA]
¡û
>W2110229708
JACJQK010000030
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
58812
58887
+
Gln
TTG
[ENA]
¡û
>W2110230651
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
32873
32799
-
Gln
TTG
[ENA]
¡û
>W2110232120
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51183
51257
+
Gln
TTG
[ENA]
¡û
>W2110312565
JADEXL010000460
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
404
330
-
Gln
TTG
[ENA]
¡û
>C241145278
CP050440
Cyanobacteriota
Tolypothrix sp. PCC 7910 [CP050440]
7301856
7301781
-
Gln
TTG
-
¡û
>W2130044898
WBKN01000816
Cyanobacteriota
Nostoc commune BAE [WBKN]
16111
16185
+
Gln
TTG
[ENA]
¡û
>W1511013840
JHEG02000036
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
6714
6790
+
Gln
TTG
[ENA]
¡û
>W1511013856
JHEG02000046
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
11857
11781
-
Gln
TTG
[ENA]
¡û
>W1610003571
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2044
2118
+
Gln
TTG
[ENA]
¡û
>W1710004191
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2044
2118
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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