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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Cyanobacteriota
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.310044 (25 seq.)
>W1711081264
LSSA01000390
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
23353
23278
-
Lys
TTT
[ENA]
¡û
>PL171000179
AP018237
Cyanobacteria
Fremyella diplosiphon NIES-3275 plasmid:plasmid04
100649
100725
+
Lys
TTT
[ENA]
¡û
>PL171000204
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11783
11858
+
Lys
TTT
[ENA]
¡û
>W141021312
AJLK01000125
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
19266
19193
-
Lys
TTT
[ENA]
¡û
>W141038484
ALVX01000007
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
56388
56313
-
Lys
TTT
[ENA]
¡û
>PL191000526
CP026690
Cyanobacteria
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid:chromosome/plasmid partitioning protein ParA (CP026690)
20361
20287
-
Lys
TTT
[ENA]
¡û
>W1910646686
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23852
23778
-
Lys
TTT
[ENA]
¡û
>W1911118839
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20275
20349
+
Lys
TTT
[ENA]
¡û
>W1911218654
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9287
9214
-
Lys
TTT
[ENA]
¡û
>PL201000435
CP040290
Cyanobacteriota
Nostoc sp. C057 plasmid:p057_I [CP040290]
4300
4226
-
Lys
TTT
[ENA]
¡û
>PL201000725
CP046707
Cyanobacteriota
Nostoc sp. ATCC 53789 plasmid:pNsp_d [CP046707]
36811
36885
+
Lys
TTT
[ENA]
¡û
>W2010745204
JACKZN010000002
Cyanobacteriota
Nostoc sp. UCD122 [JACKZN]
55597
55671
+
Lys
TTT
[ENA]
¡û
>W2010745400
JACKZR010000036
Cyanobacteriota
Nostoc sp. UCD120 [JACKZR]
10469
10543
+
Lys
TTT
[ENA]
¡û
>W2010745510
JACKZS010000057
Cyanobacteriota
Nostoc sp. UCD121 [JACKZS]
9404
9478
+
Lys
TTT
[ENA]
¡û
>W2010791994
LWSY01000165
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
23852
23778
-
Lys
TTT
[ENA]
¡û
>W2011012090
NOLK01000100
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
20275
20349
+
Lys
TTT
[ENA]
¡û
>W2011063548
NRQW01000424
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
9287
9214
-
Lys
TTT
[ENA]
¡û
>W2110230653
JACJRD010000050
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
32714
32639
-
Lys
TTT
[ENA]
¡û
>W2110230824
JACJRG010000091
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
2624
2549
-
Lys
TTT
[ENA]
¡û
>W2110231733
JACJRZ010000017
Cyanobacteriota
Fischerella sp. FACHB-380 [JACJRZ]
92209
92282
+
Lys
TTT
[ENA]
¡û
>W2110232122
JACJSH010000037
Cyanobacteriota
Nostoc sp. FACHB-133 [JACJSH]
51342
51416
+
Lys
TTT
[ENA]
¡û
>W2110312567
JADEXL010000460
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
246
171
-
Lys
TTT
[ENA]
¡û
>C241325380
CP135918
Cyanobacteriota
Fischerella sp. JS2 [CP135918]
5771951
5772026
+
Lys
TTT
-
¡û
>W1610003573
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
>W1710004193
AGCR01000095
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
2202
2278
+
Lys
TTT
[ENA]
¡û
Identical group No.347668 (2 seq.)
>PL201000452
CP040298
Cyanobacteriota
Nostoc sp. TCL26-01 plasmid:pTCL26-01_A [CP040298]
42623
42548
-
Lys
TTT
[ENA]
¡û
>W2012458235
WVID01000040
Cyanobacteriota
Nostoc sp. B(2019) [WVID]
8423
8348
-
Lys
TTT
[ENA]
¡û
Identical group No.448103 (44 seq.)
>W1710882501
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
>PL171000106
AP018191
Cyanobacteria
Nostoc sp. NIES-2111 plasmid:plasmid7
22727
22801
+
Lys
TTT
[ENA]
¡û
>PL171000521
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
1185
1111
-
Lys
TTT
[ENA]
¡û
>WENV180015456
FQKF010701788
[FQKF] soil metagenome; Soil
166
93
-
Lys
TTT
[ENA]
¡û
>W141150850
AXAQ01000168
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
2106
2180
+
Lys
TTT
[ENA]
¡û
>WENV171003653
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
2568
2492
-
Lys
TTT
[ENA]
¡û
>PL191000015
AP018321
Cyanobacteria
Nostoc sp. HK-01 NIES-2109 plasmid:phage/plasmid primase, P4 family protein (AP018321)
74074
74147
+
Lys
TTT
[ENA]
¡û
>W1910596234
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26822
26898
+
Lys
TTT
[ENA]
¡û
>W1910596318
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W1910596399
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W1910596481
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W1910596561
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26814
26890
+
Lys
TTT
[ENA]
¡û
>W1910596632
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25450
25374
-
Lys
TTT
[ENA]
¡û
>W1910596709
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W1910596777
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28003
28079
+
Lys
TTT
[ENA]
¡û
>W1910596853
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26805
26881
+
Lys
TTT
[ENA]
¡û
>W1910596965
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27043
27119
+
Lys
TTT
[ENA]
¡û
>W1910597011
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28726
28802
+
Lys
TTT
[ENA]
¡û
>W1910597136
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26806
26882
+
Lys
TTT
[ENA]
¡û
>W1910597232
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56443
56519
+
Lys
TTT
[ENA]
¡û
>PL201000414
CP040279
Cyanobacteriota
Nostoc sp. C052 plasmid:pC052_G [CP040279]
88348
88274
-
Lys
TTT
[ENA]
¡û
>W2010766577
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
26822
26898
+
Lys
TTT
[ENA]
¡û
>W2010766661
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W2010766742
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
26823
26899
+
Lys
TTT
[ENA]
¡û
>W2010766824
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W2010766904
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
26814
26890
+
Lys
TTT
[ENA]
¡û
>W2010766975
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
25450
25374
-
Lys
TTT
[ENA]
¡û
>W2010767052
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
26821
26897
+
Lys
TTT
[ENA]
¡û
>W2010767120
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
28003
28079
+
Lys
TTT
[ENA]
¡û
>W2010767196
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
26805
26881
+
Lys
TTT
[ENA]
¡û
>W2010767308
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
27043
27119
+
Lys
TTT
[ENA]
¡û
>W2010767354
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
28726
28802
+
Lys
TTT
[ENA]
¡û
>W2010767479
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
26806
26882
+
Lys
TTT
[ENA]
¡û
>W2010767575
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
56443
56519
+
Lys
TTT
[ENA]
¡û
>W2011750681
SZNH01000031
Cyanobacteriota
Nostoc sp. PA-18-2419 JC1668 [SZNH]
63738
63664
-
Lys
TTT
[ENA]
¡û
>W2110228603
JACJPN010000142
Cyanobacteriota
Leptolyngbya sp. FACHB-16 [JACJPN]
1978
1904
-
Lys
TTT
[ENA]
¡û
>W2110229822
JACJQM010000024
Cyanobacteriota
Nostoc sp. FACHB-888 [JACJQM]
41490
41564
+
Lys
TTT
[ENA]
¡û
>W2110231575
JACJRV010000056
Cyanobacteriota
Nostoc sp. FACHB-152 [JACJRV]
27108
27034
-
Lys
TTT
[ENA]
¡û
>W2110311153
JADEWI010000041
Cyanobacteriota
Nostoc sp. LEGE 06077 [JADEWI]
1738
1665
-
Lys
TTT
[ENA]
¡û
>W2110312909
JADEXU010000042
Cyanobacteriota
Nostoc sp. LEGE 12450 [JADEXU]
26992
27068
+
Lys
TTT
[ENA]
¡û
>C211013097
AP023441
Cyanobacteriota
Nostoc sp. MS1 [AP023441]
6084630
6084704
+
Lys
TTT
-
¡û
>W2110781110
WBKM01000184
Cyanobacteriota
Nostoc sp. WHI [WBKM]
20394
20470
+
Lys
TTT
[ENA]
¡û
>C241325377
CP135918
Cyanobacteriota
Fischerella sp. JS2 [CP135918]
5771150
5771223
+
Lys
TTT
-
¡û
>W1610744427
LMTZ01000166
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
1968
2042
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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