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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.213189 (13 seq.)
>W131182192
ARQE01000003
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
78965
79049
+
Leu
CAA
[ENA]
¡û
>WENV180017689
FSXN01000125
[FSXN] metagenome; soil
1875
1959
+
Leu
CAA
[ENA]
¡û
>WENV183696709
OULY01000031
[OULY] metagenome; soil
10710
10794
+
Leu
CAA
[ENA]
¡û
>WENV183697697
OUNK010022706
[OUNK] metagenome; soil
142
58
-
Leu
CAA
[ENA]
¡û
>W1810073499
PEGG01000014
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
1474
1390
-
Leu
CAA
[ENA]
¡û
>W2010724793
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
79769
79853
+
Leu
CAA
[ENA]
¡û
>C211376923
CP080376
Alphaproteobacteria
Brevundimonas sp. PAMC22021 [CP080376]
2393214
2393298
+
Leu
CAA
-
¡û
>W1510639854
CVJQ01000002
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
212227
212311
+
Leu
CAA
[ENA]
¡û
>W1610056620
BBWK01000061
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4345
4429
+
Leu
CAA
[ENA]
¡û
>W1610057059
BBWT01000018
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
41146
41062
-
Leu
CAA
[ENA]
¡û
>W1710053319
BBWK01000061
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4345
4429
+
Leu
CAA
[ENA]
¡û
>W1710053758
BBWT01000018
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
41146
41062
-
Leu
CAA
[ENA]
¡û
>W1710524475
FNIT01000005
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
79996
80080
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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