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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.143145 (19 seq.)
>W131045451
AMRL01000027
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
23085
23169
+
Leu
CAA
[ENA]
¡û
>W1711628169
MPOB01000015
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
2804
2720
-
Leu
CAA
[ENA]
¡û
>WENV180017689
FSXN01000125
[FSXN] metagenome; soil
1875
1959
+
Leu
CAA
[ENA]
¡û
>WENV183696709
OULY01000031
[OULY] metagenome; soil
10710
10794
+
Leu
CAA
[ENA]
¡û
>WENV183697697
OUNK010022706
[OUNK] metagenome; soil
142
58
-
Leu
CAA
[ENA]
¡û
>C191171222
CP039704
Alphaproteobacteria
Hankyongella ginsenosidimutans W1-2-3 [CP039704]
1273053
1273137
+
Leu
CAA
-
¡û
>W1810073499
PEGG01000014
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
1474
1390
-
Leu
CAA
[ENA]
¡û
>W1810594008
QFYP01000001
Alphaproteobacteria
Phenylobacterium hankyongense HKS-05 [QFYP]
2120756
2120840
+
Leu
CAA
[ENA]
¡û
>W2010435564
JAAALD010000067
Alphaproteobacteria
Rhizobium sp. CRIBSB [JAAALD]
18643
18727
+
Leu
CAA
[ENA]
¡û
>W2010700556
JACHFZ010000004
Alphaproteobacteria
Brevundimonas basaltis DSM 25335 [JACHFZ]
284623
284707
+
Leu
CAA
[ENA]
¡û
>W2010724793
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
79769
79853
+
Leu
CAA
[ENA]
¡û
>W2011373453
RBIG01000002
Alphaproteobacteria
Oceanibaculum indicum USBA 36 [RBIG]
144759
144675
-
Leu
CAA
[ENA]
¡û
>C211376923
CP080376
Alphaproteobacteria
Brevundimonas sp. PAMC22021 [CP080376]
2393214
2393298
+
Leu
CAA
-
¡û
>W2310022904
BSFL01000001
Alphaproteobacteria
Methylopila turkensis VKM B-2748 [BSFL]
1067600
1067516
-
Leu
CAA
[ENA]
¡û
>W2310025925
BSOY01000006
Alphaproteobacteria
Brevundimonas denitrificans NBRC 110107 [BSOY]
62044
62128
+
Leu
CAA
[ENA]
¡û
>W1510639854
CVJQ01000002
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
212227
212311
+
Leu
CAA
[ENA]
¡û
>W1610056620
BBWK01000061
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4345
4429
+
Leu
CAA
[ENA]
¡û
>W1710053319
BBWK01000061
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4345
4429
+
Leu
CAA
[ENA]
¡û
>W1710524475
FNIT01000005
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
79996
80080
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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