This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741287 (51 seq.)
>W1710878195
LMQT01000003
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
110234
110308
+
Val
CAC
[ENA]
¡û
>W1710878352
LMQW01000034
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
128956
128882
-
Val
CAC
[ENA]
¡û
>W1710878431
LMQY01000017
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
127945
127871
-
Val
CAC
[ENA]
¡û
>W1710878662
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
618213
618287
+
Val
CAC
[ENA]
¡û
>W131182216
ARQE01000013
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
24874
24800
-
Val
CAC
[ENA]
¡û
>W1711694762
MSIG01000009
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
42487
42413
-
Val
CAC
[ENA]
¡û
>W1810192907
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
561691
561617
-
Val
CAC
[ENA]
¡û
>SRA1014759
SRR023845.301707
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
78
4
-
Val
CAC
[SRA]
>W2010437316
JAAAMJ010000001
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
167111
167185
+
Val
CAC
[ENA]
¡û
>W2010678095
JACDIS010000002
Alphaproteobacteria
Chthonobacter sp. yh7-1 [JACDIS]
41947
41873
-
Val
CAC
[ENA]
¡û
>W2010724769
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
873946
873872
-
Val
CAC
[ENA]
¡û
>W2011604978
SJFN01000037
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
33578
33652
+
Val
CAC
[ENA]
¡û
>W2012141168
VTOM01000007
Alphaproteobacteria
Jiella sp. R10 [VTOM]
55926
55852
-
Val
CAC
[ENA]
¡û
>W2012216898
VZDO01000002
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
157674
157600
-
Val
CAC
[ENA]
¡û
>W2012317693
WEZG01000003
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
23435
23509
+
Val
CAC
[ENA]
¡û
>W2110026805
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
772748
772822
+
Val
CAC
[ENA]
¡û
>C211158632
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2965942
2966016
+
Val
CAC
-
¡û
>C211310731
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2506688
2506762
+
Val
CAC
-
¡û
>C231260343
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
3312153
3312227
+
Val
CAC
-
¡û
>C231269682
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
1591586
1591512
-
Val
CAC
-
¡û
>C231550740
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
2244689
2244615
-
Val
CAC
-
¡û
>W1511344081
JRFJ01000003
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
93063
92989
-
Val
CAC
[ENA]
¡û
>C161003884
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2264886
2264812
-
Val
CAC
[Ensembl]
¡û
>W1610056447
BBWH01000002
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
48830
48904
+
Val
CAC
[ENA]
¡û
>W1610056512
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
26066
25992
-
Val
CAC
[ENA]
¡û
>W1610056601
BBWK01000003
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
10666
10740
+
Val
CAC
[ENA]
¡û
>W1610056686
BBWL01000042
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
74637
74711
+
Val
CAC
[ENA]
¡û
>W1610056723
BBWM01000053
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
51115
51041
-
Val
CAC
[ENA]
¡û
>W1610056896
BBWQ01000005
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
173202
173128
-
Val
CAC
[ENA]
¡û
>W1610056936
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
618121
618195
+
Val
CAC
[ENA]
¡û
>W1610057022
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
35586
35512
-
Val
CAC
[ENA]
¡û
>W1610057084
BBWT01000052
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
24588
24514
-
Val
CAC
[ENA]
¡û
>W1610588104
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
6156
6230
+
Val
CAC
[ENA]
¡û
>W1610588165
LDQA01000016
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
51446
51372
-
Val
CAC
[ENA]
¡û
>W1610740541
LMQT01000003
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
110234
110308
+
Val
CAC
[ENA]
¡û
>W1610740698
LMQW01000034
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
128956
128882
-
Val
CAC
[ENA]
¡û
>W1610740777
LMQY01000017
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
127945
127871
-
Val
CAC
[ENA]
¡û
>W1610741008
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
618213
618287
+
Val
CAC
[ENA]
¡û
>W1710053146
BBWH01000002
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
48830
48904
+
Val
CAC
[ENA]
¡û
>W1710053211
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
26066
25992
-
Val
CAC
[ENA]
¡û
>W1710053300
BBWK01000003
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
10666
10740
+
Val
CAC
[ENA]
¡û
>W1710053385
BBWL01000042
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
74637
74711
+
Val
CAC
[ENA]
¡û
>W1710053422
BBWM01000053
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
51115
51041
-
Val
CAC
[ENA]
¡û
>W1710053595
BBWQ01000005
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
173202
173128
-
Val
CAC
[ENA]
¡û
>W1710053635
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
618121
618195
+
Val
CAC
[ENA]
¡û
>W1710053721
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
35586
35512
-
Val
CAC
[ENA]
¡û
>W1710053783
BBWT01000052
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
24588
24514
-
Val
CAC
[ENA]
¡û
>W1710524472
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
119948
119874
-
Val
CAC
[ENA]
¡û
>W1710588119
FQZC01000001
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
762303
762229
-
Val
CAC
[ENA]
¡û
>W1710707384
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
6156
6230
+
Val
CAC
[ENA]
¡û
>W1710707445
LDQA01000016
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
51446
51372
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK