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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474459 (72 seq.)
>W1710878195
LMQT01000003
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
110234
110308
+
Val
CAC
[ENA]
¡û
>W1710878352
LMQW01000034
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
128956
128882
-
Val
CAC
[ENA]
¡û
>W131218145
ATXK01000006
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
79123
79049
-
Val
CAC
[ENA]
¡û
>W1711475552
MJUX01000001
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
270234
270160
-
Val
CAC
[ENA]
¡û
>W131166444
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
555443
555369
-
Val
GAC
[ENA]
¡û
>W131175664
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
246053
246127
+
Val
GAC
[ENA]
¡û
>w015745
AAPJ01000001
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
351262
351336
+
Val
CAC
[ENA]
¡û
>W141151377
AXBA01000013
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
73326
73400
+
Val
GAC
[ENA]
¡û
>WENV170672309
LAZR01000058
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
44774
44700
-
Val
CAC
[ENA]
¡û
>WENV170707552
LNAP01025171
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1026
952
-
Val
GAC
[ENA]
¡û
>W1810192907
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
561691
561617
-
Val
CAC
[ENA]
¡û
>W1810489484
QBBV01000001
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
1468642
1468716
+
Val
CAC
[ENA]
¡û
>W1810489539
QBBW01000001
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
273423
273349
-
Val
CAC
[ENA]
¡û
>W1810889064
QURL01000002
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
547410
547336
-
Val
CAC
[ENA]
¡û
>SRA1014759
SRR023845.301707
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
78
4
-
Val
CAC
[SRA]
>W2010437316
JAAAMJ010000001
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
167111
167185
+
Val
CAC
[ENA]
¡û
>W2010678095
JACDIS010000002
Alphaproteobacteria
Chthonobacter sp. yh7-1 [JACDIS]
41947
41873
-
Val
CAC
[ENA]
¡û
>W2010699371
JACHEY010000010
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
122126
122200
+
Val
CAC
[ENA]
¡û
>W2010724769
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
873946
873872
-
Val
CAC
[ENA]
¡û
>W2010725832
JACIEM010000001
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
914312
914386
+
Val
CAC
[ENA]
¡û
>W2011496722
RXIO01000005
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
172754
172680
-
Val
GAC
[ENA]
¡û
>W2011604978
SJFN01000037
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
33578
33652
+
Val
CAC
[ENA]
¡û
>W2011633875
SMFY01000007
Alphaproteobacteria
Ancylobacter aquaticus DSM 101 [SMFY]
9428
9354
-
Val
GAC
[ENA]
¡û
>W2012141168
VTOM01000007
Alphaproteobacteria
Jiella sp. R10 [VTOM]
55926
55852
-
Val
CAC
[ENA]
¡û
>W2110026805
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
772748
772822
+
Val
CAC
[ENA]
¡û
>W2110027705
BMJJ01000004
Alphaproteobacteria
Aureimonas glaciei CGMCC 1.15493 [BMJJ]
236698
236624
-
Val
CAC
[ENA]
¡û
>W2110251064
JACSGS010000011
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
12901
12827
-
Val
CAC
[ENA]
¡û
>W2110309563
JADDXW010000009
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
18771
18697
-
Val
CAC
[ENA]
¡û
>W2110423190
JAEKJA010000010
Alphaproteobacteria
Acuticoccus sp. 2012 [JAEKJA]
154285
154359
+
Val
CAC
[ENA]
¡û
>W2110590335
JAHBGC010000038
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
464380
464454
+
Val
GAC
[ENA]
¡û
>W2110590365
JAHBGD010000012
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
5248
5174
-
Val
GAC
[ENA]
¡û
>W2110593095
JAHCQH010000018
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
118234
118308
+
Val
GAC
[ENA]
¡û
>C201154096
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
1683731
1683657
-
Val
GAC
-
¡û
>C211029094
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
2828822
2828896
+
Val
CAC
-
¡û
>C211158632
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2965942
2966016
+
Val
CAC
-
¡û
>C211310731
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2506688
2506762
+
Val
CAC
-
¡û
>C231179881
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
2354289
2354363
+
Val
GAC
-
¡û
>C231550740
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
2244689
2244615
-
Val
CAC
-
¡û
>W2310022943
BSFM01000001
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
5248
5174
-
Val
GAC
[ENA]
¡û
>W1511344081
JRFJ01000003
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
93063
92989
-
Val
CAC
[ENA]
¡û
>C161003884
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2264886
2264812
-
Val
CAC
[Ensembl]
¡û
>W1610056447
BBWH01000002
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
48830
48904
+
Val
CAC
[ENA]
¡û
>W1610056601
BBWK01000003
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
10666
10740
+
Val
CAC
[ENA]
¡û
>W1610056774
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
159400
159474
+
Val
CAC
[ENA]
¡û
>W1610056857
BBWP01000021
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
111821
111895
+
Val
CAC
[ENA]
¡û
>W1610056896
BBWQ01000005
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
173202
173128
-
Val
CAC
[ENA]
¡û
>W1610056936
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
618121
618195
+
Val
CAC
[ENA]
¡û
>W1610057022
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
35586
35512
-
Val
CAC
[ENA]
¡û
>W1610057084
BBWT01000052
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
24588
24514
-
Val
CAC
[ENA]
¡û
>W1610588104
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
6156
6230
+
Val
CAC
[ENA]
¡û
>W1610588165
LDQA01000016
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
51446
51372
-
Val
CAC
[ENA]
¡û
>W1610740541
LMQT01000003
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
110234
110308
+
Val
CAC
[ENA]
¡û
>W1610740698
LMQW01000034
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
128956
128882
-
Val
CAC
[ENA]
¡û
>W1710015687
AQRB01000001
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
278285
278359
+
Val
CAC
[ENA]
¡û
>W1710053146
BBWH01000002
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
48830
48904
+
Val
CAC
[ENA]
¡û
>W1710053211
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
26066
25992
-
Val
CAC
[ENA]
¡û
>W1710053300
BBWK01000003
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
10666
10740
+
Val
CAC
[ENA]
¡û
>W1710053385
BBWL01000042
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
74637
74711
+
Val
CAC
[ENA]
¡û
>W1710053422
BBWM01000053
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
51115
51041
-
Val
CAC
[ENA]
¡û
>W1710053473
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
159400
159474
+
Val
CAC
[ENA]
¡û
>W1710053556
BBWP01000021
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
111821
111895
+
Val
CAC
[ENA]
¡û
>W1710053595
BBWQ01000005
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
173202
173128
-
Val
CAC
[ENA]
¡û
>W1710053635
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
618121
618195
+
Val
CAC
[ENA]
¡û
>W1710053721
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
35586
35512
-
Val
CAC
[ENA]
¡û
>W1710053783
BBWT01000052
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
24588
24514
-
Val
CAC
[ENA]
¡û
>W1710505314
FMTP01000005
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
356962
357036
+
Val
GAC
[ENA]
¡û
>W1710524472
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
119948
119874
-
Val
CAC
[ENA]
¡û
>W1710588119
FQZC01000001
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
762303
762229
-
Val
CAC
[ENA]
¡û
>W1710601598
FUXL01000003
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
439392
439318
-
Val
CAC
[ENA]
¡û
>W1710606265
FWXR01000001
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
4794
4720
-
Val
CAC
[ENA]
¡û
>W1710707384
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
6156
6230
+
Val
CAC
[ENA]
¡û
>W1710707445
LDQA01000016
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
51446
51372
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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