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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.442098 (55 seq.)
>W1710875328
LMOH01000014
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
3214
3140
-
Gly
CCC
[ENA]
¡û
>W1710878188
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
467696
467622
-
Gly
CCC
[ENA]
¡û
>W1710878368
LMQW01000053
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
142239
142313
+
Gly
CCC
[ENA]
¡û
>W1710878691
LMRD01000013
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
14018
13944
-
Gly
CCC
[ENA]
¡û
>WENV010953
AACY020297677
Marine microbial communities from Global Ocean Sampling (GOS)
5474
5400
-
Gly
CCC
[ENA]
>w018746
AATP01000001
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
417862
417938
+
Gly
CCC
[ENA]
¡û
>WENV170574907
FLYN01016320
[FLYN] hot springs metagenome; Sediment
340
266
-
Gly
CCC
[ENA]
¡û
>WENV170672624
LAZR01000494
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
8278
8352
+
Gly
CCC
[ENA]
¡û
>W1911798345
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
357556
357630
+
Gly
CCC
[ENA]
¡û
>W1810192925
PKMZ01000012
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
14372
14298
-
Gly
CCC
[ENA]
¡û
>W1810889050
QURL01000001
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
468094
468168
+
Gly
CCC
[ENA]
¡û
>SRA1015334
SRR023846.21787
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
16
90
+
Gly
CCC
[SRA]
>W2010437317
JAAAMJ010000001
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
922313
922239
-
Gly
CCC
[ENA]
¡û
>W2010724741
JACIDO010000003
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
484403
484329
-
Gly
CCC
[ENA]
¡û
>W2010724776
JACIDP010000002
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
337612
337686
+
Gly
CCC
[ENA]
¡û
>W2010724832
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
484403
484329
-
Gly
CCC
[ENA]
¡û
>W2010725737
JACIEK010000001
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
1309649
1309575
-
Gly
CCC
[ENA]
¡û
>W2010725858
JACIEM010000005
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
409055
409129
+
Gly
CCC
[ENA]
¡û
>W2011343313
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
357556
357630
+
Gly
CCC
[ENA]
¡û
>W2110027716
BMJJ01000009
Alphaproteobacteria
Aureimonas glaciei CGMCC 1.15493 [BMJJ]
129777
129703
-
Gly
CCC
[ENA]
¡û
>W2110095923
CAJCKW010000003
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
321294
321368
+
Gly
CCC
[ENA]
¡û
>W2110309532
JADDXW010000001
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
155132
155206
+
Gly
CCC
[ENA]
¡û
>C211029087
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
1224131
1224205
+
Gly
CCC
-
¡û
>C211124111
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
2789925
2789999
+
Gly
CCC
-
¡û
>C211310728
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2275184
2275258
+
Gly
CCC
-
¡û
>C231269644
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
721994
722068
+
Gly
CCC
-
¡û
>C161003865
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
3404082
3404008
-
Gly
CCC
[Ensembl]
¡û
>W1610056459
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
79418
79492
+
Gly
CCC
[ENA]
¡û
>W1610056542
BBWI01000043
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
4911
4837
-
Gly
CCC
[ENA]
¡û
>W1610056549
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
261454
261380
-
Gly
CCC
[ENA]
¡û
>W1610056607
BBWK01000015
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15397
15471
+
Gly
CCC
[ENA]
¡û
>W1610056652
BBWL01000022
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
62276
62350
+
Gly
CCC
[ENA]
¡û
>W1610056701
BBWM01000005
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
54232
54158
-
Gly
CCC
[ENA]
¡û
>W1610056796
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
226879
226953
+
Gly
CCC
[ENA]
¡û
>W1610056989
BBWS01000016
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
54247
54173
-
Gly
CCC
[ENA]
¡û
>W1610057083
BBWT01000051
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
171509
171583
+
Gly
CCC
[ENA]
¡û
>W1610588125
LDPZ01000022
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
100488
100562
+
Gly
CCC
[ENA]
¡û
>W1610588194
LDQA01000056
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
66568
66642
+
Gly
CCC
[ENA]
¡û
>W1610737674
LMOH01000014
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
3214
3140
-
Gly
CCC
[ENA]
¡û
>W1610740534
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
467696
467622
-
Gly
CCC
[ENA]
¡û
>W1610740714
LMQW01000053
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
142239
142313
+
Gly
CCC
[ENA]
¡û
>W1610741037
LMRD01000013
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
14018
13944
-
Gly
CCC
[ENA]
¡û
>W1710053158
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
79418
79492
+
Gly
CCC
[ENA]
¡û
>W1710053241
BBWI01000043
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
4911
4837
-
Gly
CCC
[ENA]
¡û
>W1710053248
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
261454
261380
-
Gly
CCC
[ENA]
¡û
>W1710053306
BBWK01000015
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15397
15471
+
Gly
CCC
[ENA]
¡û
>W1710053351
BBWL01000022
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
62276
62350
+
Gly
CCC
[ENA]
¡û
>W1710053400
BBWM01000005
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
54232
54158
-
Gly
CCC
[ENA]
¡û
>W1710053495
BBWO01000001
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
226879
226953
+
Gly
CCC
[ENA]
¡û
>W1710053688
BBWS01000016
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
54247
54173
-
Gly
CCC
[ENA]
¡û
>W1710053782
BBWT01000051
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
171509
171583
+
Gly
CCC
[ENA]
¡û
>W1710524463
FNIT01000002
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
342998
342924
-
Gly
CCC
[ENA]
¡û
>W1710561282
FOOA01000031
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
24140
24214
+
Gly
CCC
[ENA]
¡û
>W1710707405
LDPZ01000022
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
100488
100562
+
Gly
CCC
[ENA]
¡û
>W1710707474
LDQA01000056
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
66568
66642
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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