This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.252015 (16 seq.)
>W1711501368
MKRN01000117
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
15259
15183
-
Arg
CCT
[ENA]
¡û
>W1711502261
MKSM01000111
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
50694
50618
-
Arg
CCT
[ENA]
¡û
>C014916
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
566183
566259
+
Arg
CCT
[Ensembl]
¡û
>C015348
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
512678
512754
+
Arg
CCT
[Ensembl]
¡û
>w012972
AAMY01000001
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
375028
374955
-
Arg
CCT
[ENA]
¡û
>W09103004
AAIS01000002
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
391938
391862
-
Arg
CCT
[ENA]
¡û
>W1910182826
BJNF01000018
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
25099
25023
-
Arg
CCT
[ENA]
¡û
>W1810682778
QKVK01000001
Alphaproteobacteria
Aestuariivirga litoralis KCTC 52945 [QKVK]
781043
781119
+
Arg
CCT
[ENA]
¡û
>W2010096441
BJNF01000018
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
25099
25023
-
Arg
CCT
[ENA]
¡û
>W2010370654
CAHJXE010000102
Alphaproteobacteria
Rhizobiales bacterium [CAHJXE]
8693
8617
-
Arg
CCT
[ENA]
¡û
>W2010724780
JACIDP010000003
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
132647
132571
-
Arg
CCT
[ENA]
¡û
>W2011495233
RWKV01000016
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
467058
466982
-
Arg
CCT
[ENA]
¡û
>W2011627316
SMAI01000004
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
12512
12588
+
Arg
CCT
[ENA]
¡û
>W2110590402
JAHBGE010000010
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
62968
63044
+
Arg
CCT
[ENA]
¡û
>C211029109
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
3955987
3955911
-
Arg
CCT
-
¡û
>W1710524474
FNIT01000004
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
132897
132821
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK