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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55748 (27 seq.)
>W1711228839
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
50001
49912
-
Ser
CGA
[ENA]
¡û
>C181089616
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
623132
623221
+
Ser
CGA
-
¡û
>W2010724772
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
349700
349611
-
Ser
CGA
[ENA]
¡û
>W2010725026
JACIDU010000010
Alphaproteobacteria
Rhizobium borbori DSM 26385 [JACIDU]
134447
134536
+
Ser
CGA
[ENA]
¡û
>W2011663092
SOPH01000001
Alphaproteobacteria
Methylocystis heyeri H2 [SOPH]
863114
863203
+
Ser
CGA
[ENA]
¡û
>W2012141157
VTOM01000002
Alphaproteobacteria
Jiella sp. R10 [VTOM]
237446
237357
-
Ser
CGA
[ENA]
¡û
>W2110023746
BMGG01000013
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
31762
31673
-
Ser
CGA
[ENA]
¡û
>W2110687586
JAINDZ010000025
Alphaproteobacteria
Methylosinus sp. Sm6 [JAINDZ]
4428
4339
-
Ser
CGA
[ENA]
¡û
>C211158621
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
1028708
1028797
+
Ser
CGA
-
¡û
>C231550727
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
5710200
5710111
-
Ser
CGA
-
¡û
>W10118846
ADVE01000081
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
16078
15989
-
Ser
CGA
[ENA]
¡û
>C241105177
CP046052
Alphaproteobacteria
Methylocystis heyeri H2 [CP046052]
598522
598611
+
Ser
CGA
-
¡û
>C241237353
CP119869
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP119869]
2508157
2508068
-
Ser
CGA
-
¡û
>W1511344053
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
298549
298638
+
Ser
CGA
[ENA]
¡û
>W11125018
ADVE01000081
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
16078
15989
-
Ser
CGA
[ENA]
¡û
>W1610056603
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1610056741
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5635
5546
-
Ser
CGA
[ENA]
¡û
>W1610057026
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W1610588121
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
61999
61910
-
Ser
CGA
[ENA]
¡û
>W1610588189
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
69104
69193
+
Ser
CGA
[ENA]
¡û
>W1611012756
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
50001
49912
-
Ser
CGA
[ENA]
¡û
>W1710053302
BBWK01000006
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
87178
87089
-
Ser
CGA
[ENA]
¡û
>W1710053440
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5635
5546
-
Ser
CGA
[ENA]
¡û
>W1710053725
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
131980
132069
+
Ser
CGA
[ENA]
¡û
>W1710524462
FNIT01000001
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
129877
129788
-
Ser
CGA
[ENA]
¡û
>W1710707401
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
61999
61910
-
Ser
CGA
[ENA]
¡û
>W1710707469
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
69104
69193
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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