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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.367625 (70 seq.)
>W1710852541
LLVU01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
79803
79728
-
Ala
CGC
[ENA]
¡û
>W1710860166
LMCR01000001
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
1010200
1010125
-
Ala
CGC
[ENA]
¡û
>W1710861930
LMEA01000001
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
40444
40519
+
Ala
CGC
[ENA]
¡û
>W1710862585
LMEM01000012
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
350812
350887
+
Ala
CGC
[ENA]
¡û
>W1710878200
LMQT01000007
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
2178
2103
-
Ala
CGC
[ENA]
¡û
>W1710878333
LMQW01000010
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
14752
14677
-
Ala
CGC
[ENA]
¡û
>W1711385173
MEDU01000130
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
19
94
+
Ala
CGC
[ENA]
¡û
>W1711385947
MEEU01000041
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
28642
28717
+
Ala
CGC
[ENA]
¡û
>W1711501658
MKRW01000103
Alphaproteobacteria
Alphaproteobacteria bacterium 62-8 [MKRW]
5977
6052
+
Ala
CGC
[ENA]
¡û
>W1711504897
MKUZ01000024
Alphaproteobacteria
Devosia sp. 66-22 [MKUZ]
165907
165982
+
Ala
CGC
[ENA]
¡û
>W1711504965
MKVB01000003
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
562051
561976
-
Ala
CGC
[ENA]
¡û
>C171067759
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
930318
930393
+
Ala
CGC
-
¡û
>WENV180020716
FTDB01000039
[FTDB] metagenome; soil
2029
2104
+
Ala
CGC
[ENA]
¡û
>WENV180022634
FTGL01001737
[FTGL] metagenome; soil
9979
10054
+
Ala
CGC
[ENA]
¡û
>WENV180022814
FTGT01000228
[FTGT] metagenome; soil
146
71
-
Ala
CGC
[ENA]
¡û
>WENV180029289
FTJI01406730
[FTJI] metagenome; soil
362
437
+
Ala
CGC
[ENA]
¡û
>WENV180034801
FTKR01373727
[FTKR] metagenome; soil
362
437
+
Ala
CGC
[ENA]
¡û
>WENV180350389
OBLQ010000492
[OBLQ] soil metagenome; soil
12520
12445
-
Ala
CGC
[ENA]
¡û
>WENV180350862
OBLQ010013865
[OBLQ] soil metagenome; soil
1351
1426
+
Ala
CGC
[ENA]
¡û
>WENV180584178
OCOJ01015902
[OCOJ] soil metagenome; soil
589
514
-
Ala
CGC
[ENA]
¡û
>WENV180694345
OCZS012223739
[OCZS] soil metagenome; soil
78
153
+
Ala
CGC
[ENA]
¡û
>W141191782
AYPZ01000049
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
199080
199155
+
Ala
CGC
[ENA]
¡û
>W141191802
AYQA01000011
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
56614
56689
+
Ala
CGC
[ENA]
¡û
>W141191863
AYQB01000033
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
14717
14792
+
Ala
CGC
[ENA]
¡û
>W141191909
AYQC01000027
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
14721
14796
+
Ala
CGC
[ENA]
¡û
>WENV183725825
PJQF01021203
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
230
305
+
Ala
CGC
[ENA]
¡û
>W141485049
JFZB01000038
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
11414
11489
+
Ala
CGC
[ENA]
¡û
>W1911495368
OBMT01000008
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
144311
144386
+
Ala
CGC
[ENA]
¡û
>W1911696612
QMEL01000006
Alphaproteobacteria
Pelagibacterium sp. IMCC34151 [QMEL]
93888
93813
-
Ala
CGC
[ENA]
¡û
>W1911798350
QYRN01000008
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
190993
191068
+
Ala
CGC
[ENA]
¡û
>W1810192919
PKMZ01000008
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
60192
60117
-
Ala
CGC
[ENA]
¡û
>W1810672418
QJTK01000005
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
132642
132717
+
Ala
CGC
[ENA]
¡û
>W1810685807
QKZO01000003
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
331698
331773
+
Ala
CGC
[ENA]
¡û
>W1810721637
QNSD01000015
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
92174
92249
+
Ala
CGC
[ENA]
¡û
>W2010370380
CAHJWU010000060
Alphaproteobacteria
Rhodospirillales bacterium [CAHJWU]
11538
11613
+
Ala
CGC
[ENA]
¡û
>W2010586385
JABAOM010000003
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
262961
263036
+
Ala
CGC
[ENA]
¡û
>W2010605032
JABKAT010000027
Alphaproteobacteria
Acetobacteraceae bacterium PAMC 26568 [JABKAT]
141481
141556
+
Ala
CGC
[ENA]
¡û
>W2010698013
JACHDX010000001
Alphaproteobacteria
Sphingobium sp. B10D7A [JACHDX]
2876815
2876740
-
Ala
CGC
[ENA]
¡û
>W2010724743
JACIDO010000004
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
82578
82653
+
Ala
CGC
[ENA]
¡û
>W2010724777
JACIDP010000002
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
609969
610044
+
Ala
CGC
[ENA]
¡û
>W2011156272
OBMT01000008
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
144311
144386
+
Ala
CGC
[ENA]
¡û
>W2011397721
RCHI01000015
Alphaproteobacteria
Rhodobacter sp. BO-81 [RCHI]
101482
101557
+
Ala
CGC
[ENA]
¡û
>W2011525411
SAUV01000003
Alphaproteobacteria
Sinirhodobacter sp. 24D10-4-9 [SAUV]
12148
12073
-
Ala
CGC
[ENA]
¡û
>W2011525472
SAUW01000009
Alphaproteobacteria
Sinirhodobacter sp. 2D-5 [SAUW]
1046
971
-
Ala
CGC
[ENA]
¡û
>W2011525511
SAUX01000004
Alphaproteobacteria
Sinirhodobacter sp. D19-10-3-21 [SAUX]
25924
25999
+
Ala
CGC
[ENA]
¡û
>W2011525615
SAUZ01000007
Alphaproteobacteria
Sinirhodobacter sp. SK2B-1 [SAUZ]
25519
25444
-
Ala
CGC
[ENA]
¡û
>W2011525671
SAVA01000005
Alphaproteobacteria
Sinirhodobacter sp. CGMCC 1.12963 [SAVA]
260992
260917
-
Ala
CGC
[ENA]
¡û
>W2011525730
SAVB01000021
Alphaproteobacteria
Sinirhodobacter ferrireducens CCTCC AB2012026 [SAVB]
103690
103765
+
Ala
CGC
[ENA]
¡û
>W2011706053
SWJZ01000012
Alphaproteobacteria
Rhodobacter capsulatus SP108 [SWJZ]
11095
11170
+
Ala
CGC
[ENA]
¡û
>W2012036637
VIBE01000014
Alphaproteobacteria
Rhodobacter capsulatus SL [VIBE]
14782
14857
+
Ala
CGC
[ENA]
¡û
>W2110093438
CAJCHV010000161
Actinomycetota
Actinomycetales bacterium [CAJCHV]
2903
2828
-
Ala
CGC
[ENA]
¡û
>W2110198482
JACADQ010000213
Alphaproteobacteria
Roseomonas sp. MO17 [JACADQ]
6431
6356
-
Ala
CGC
[ENA]
¡û
>W2110309561
JADDXW010000007
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
56351
56276
-
Ala
CGC
[ENA]
¡û
>W2110640648
JAHREN010000001
Alphaproteobacteria
Siccirubricoccus sp. G192 [JAHREN]
2237421
2237346
-
Ala
CGC
[ENA]
¡û
>C211144035
CP061202
Alphaproteobacteria
Rhodobacter capsulatus A12 [CP061202]
2216018
2216093
+
Ala
CGC
-
¡û
>C211158661
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
953008
952933
-
Ala
CGC
-
¡û
>C211310748
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
3753468
3753543
+
Ala
CGC
-
¡û
>W2110717176
JAJAVB010000009
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
124624
124699
+
Ala
CGC
[ENA]
¡û
>C211376189
CP080327
Alphaproteobacteria
Aquisediminimonas profunda DS48-3 [CP080327]
413989
414064
+
Ala
CGC
-
¡û
>C231375876
CP096972
Alphaproteobacteria
Sphingomonas sp. SUN039 [CP096972]
2431780
2431705
-
Ala
CGC
-
¡û
>C231483395
CP104007
Alphaproteobacteria
Devosia sp. FJ2-5-3 [CP104007]
291384
291309
-
Ala
CGC
-
¡û
>C231501206
CP104974
Alphaproteobacteria
Devosia sp. A8/3-2 [CP104974]
910368
910293
-
Ala
CGC
-
¡û
>C231619880
CP119312
Alphaproteobacteria
Devosia sp. [CP119312]
4051256
4051331
+
Ala
CGC
-
¡û
>C231623753
CP119563
Alphaproteobacteria
Rhodobacter capsulatus 37b4 [CP119563]
1293731
1293656
-
Ala
CGC
-
¡û
>C241064537
CP042304
Alphaproteobacteria
Devosia ginsengisoli Gsoil 520 [CP042304]
2951978
2952053
+
Ala
CGC
-
¡û
>C241158837
CP053708
Alphaproteobacteria
Lichenicola cladoniae PAMC 26569 [CP053708]
363668
363593
-
Ala
CGC
-
¡û
>C161047950
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
1937447
1937522
+
Ala
CGC
-
¡û
>W1610715680
LLVU01000045
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
79803
79728
-
Ala
CGC
[ENA]
¡û
>W1610722512
LMCR01000001
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
1010200
1010125
-
Ala
CGC
[ENA]
¡û
>W1610724276
LMEA01000001
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
40444
40519
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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