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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511056 (72 seq.)
>W1710856830
LLZR01000001
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
429397
429322
-
Thr
CGT
[ENA]
¡û
>W1710927027
LOEX01000093
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
14640
14715
+
Thr
CGT
[ENA]
¡û
>W1711501870
MKSC01000669
Alphaproteobacteria
Shinella sp. 65-6 [MKSC]
1099
1024
-
Thr
CGT
[ENA]
¡û
>W131182209
ARQE01000006
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
175123
175198
+
Thr
CGT
[ENA]
¡û
>C014682
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
1385864
1385939
+
Thr
CGT
[Ensembl]
¡û
>W141093725
AVBN01000006
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
6729
6804
+
Thr
CGT
[ENA]
¡û
>W141093781
AVBO01000012
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
14409
14334
-
Thr
CGT
[ENA]
¡û
>W141093815
AVBP01000003
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
6829
6904
+
Thr
CGT
[ENA]
¡û
>W141093887
AVBQ01000027
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
6844
6919
+
Thr
CGT
[ENA]
¡û
>WENV181171948
OEIV010417613
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
87
162
+
Thr
CGT
[ENA]
¡û
>WENV181839852
OGVO01017929
[OGVO] freshwater metagenome; freshwater
609
684
+
Thr
CGT
[ENA]
¡û
>WENV183725062
PJQE01142876
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
137
62
-
Thr
CGT
[ENA]
¡û
>WENV183742291
PJUH01006564
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
788
713
-
Thr
CGT
[ENA]
¡û
>WENV183744173
PJUK01001217
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
174
99
-
Thr
CGT
[ENA]
¡û
>WENV170553382
CXWK01016596
[CXWK] wastewater metagenome; activated sludge
2335
2260
-
Thr
CGT
[ENA]
¡û
>WENV170553946
CXWK01038962
[CXWK] wastewater metagenome; activated sludge
502
577
+
Thr
CGT
[ENA]
¡û
>WENV170712363
LNFM01012473
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
388
313
-
Thr
CGT
[ENA]
¡û
>C181029156
CP017940
Alphaproteobacteria
Phyllobacterium zundukense Tri-48; RCAM 03910 [CP017940]
3068781
3068856
+
Thr
CGT
-
¡û
>W09100310
AAAV03000002
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
659583
659508
-
Thr
CGT
[ENA]
¡û
>W141814368
JQGC01000015
Alphaproteobacteria
Devosia riboflavina [JQGC]
112818
112893
+
Thr
CGT
[ENA]
¡û
>W1910693418
MDEO01000036
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
195513
195588
+
Thr
CGT
[ENA]
¡û
>W1910727945
MGVU01000100
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
89
164
+
Thr
CGT
[ENA]
¡û
>W1910839907
MZMT01000053
Alphaproteobacteria
Phyllobacterium sp. Tri-38 [MZMT]
666614
666689
+
Thr
CGT
[ENA]
¡û
>W1911541074
OOFM01000004
Alphaproteobacteria
Ochrobactrum haematophilum FI11154 [OOFM]
942782
942857
+
Thr
CGT
[ENA]
¡û
>W1911701475
QNUJ01000007
Alphaproteobacteria
Shinella zoogloeoides PQ7 [QNUJ]
283538
283463
-
Thr
CGT
[ENA]
¡û
>W2010670412
JACCAY010000001
Alphaproteobacteria
Mesorhizobium sp. YL-MPnR-2016 [JACCAY]
4036604
4036529
-
Thr
CGT
[ENA]
¡û
>W2010703798
JACHIK010000016
Alphaproteobacteria
Shinella fusca DSM 21319 [JACHIK]
12213
12288
+
Thr
CGT
[ENA]
¡û
>W2010724775
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
2301
2226
-
Thr
CGT
[ENA]
¡û
>W2010725744
JACIEK010000003
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
123698
123623
-
Thr
CGT
[ENA]
¡û
>W2010827232
MDEO01000036
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
195513
195588
+
Thr
CGT
[ENA]
¡û
>W2010861373
MGVU01000100
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
89
164
+
Thr
CGT
[ENA]
¡û
>W2010930098
MZMT01000053
Alphaproteobacteria
Phyllobacterium sp. Tri-38 [MZMT]
666614
666689
+
Thr
CGT
[ENA]
¡û
>W2011170269
OOFM01000004
Alphaproteobacteria
Ochrobactrum haematophilum FI11154 [OOFM]
942782
942857
+
Thr
CGT
[ENA]
¡û
>W2011278015
QNUJ01000007
Alphaproteobacteria
Shinella zoogloeoides PQ7 [QNUJ]
283538
283463
-
Thr
CGT
[ENA]
¡û
>W2011397670
RCHH01000009
Alphaproteobacteria
Ochrobactrum sp. BO-7 [RCHH]
135097
135022
-
Thr
CGT
[ENA]
¡û
>W2011480324
RQUW01000010
Alphaproteobacteria
Brucellaceae bacterium VT-16-1752 [RQUW]
93347
93422
+
Thr
CGT
[ENA]
¡û
>W2011495245
RWKW01000025
Alphaproteobacteria
Mesorhizobium sp. B2.3 [RWKW]
114615
114690
+
Thr
CGT
[ENA]
¡û
>W2011538938
SCNJ01000001
Alphaproteobacteria
Rhizobiales bacterium 3FA27D7 [SCNJ]
195795
195870
+
Thr
CGT
[ENA]
¡û
>W2011772479
UBPB01000033
Alphaproteobacteria
Rhizobiales bacterium [UBPB]
50608
50683
+
Thr
CGT
[ENA]
¡û
>W2011776517
UBSR01000023
Alphaproteobacteria
Rhizobiales bacterium [UBSR]
110786
110861
+
Thr
CGT
[ENA]
¡û
>W2011783919
UBZG01000003
Alphaproteobacteria
Rhizobiales bacterium [UBZG]
428041
428116
+
Thr
CGT
[ENA]
¡û
>W2011791058
UCFM01000001
Alphaproteobacteria
Rhizobiales bacterium [UCFM]
141426
141501
+
Thr
CGT
[ENA]
¡û
>W2011793714
UCHT01000075
Alphaproteobacteria
Rhizobiales bacterium [UCHT]
2162
2087
-
Thr
CGT
[ENA]
¡û
>W2011803270
UEIF01000021
Alphaproteobacteria
Rhizobiales bacterium [UEIF]
474385
474310
-
Thr
CGT
[ENA]
¡û
>W2011847535
UICB01000001
Alphaproteobacteria
Rhizobiales bacterium [UICB]
3285711
3285786
+
Thr
CGT
[ENA]
¡û
>W2012011198
VEWL01000001
Alphaproteobacteria
Ochrobactrum sp. LCB8 [VEWL]
324924
324849
-
Thr
CGT
[ENA]
¡û
>W2012444845
WUML01000038
Alphaproteobacteria
Shinella zoogloeoides DSM 287 [WUML]
658
583
-
Thr
CGT
[ENA]
¡û
>W2110740106
JAJEWN010000001
Alphaproteobacteria
Rhizobium petrolearium OS53 [JAJEWN]
107045
106970
-
Thr
CGT
[ENA]
¡û
>C231197556
CP084752
Betaproteobacteria
Kinneretia sp. XES5 [CP084752]
1343031
1343106
+
Thr
CGT
-
¡û
>C231230812
CP086610
Alphaproteobacteria
Shinella zoogloeoides ATCC 19623 [CP086610]
162256
162181
-
Thr
CGT
-
¡û
>C231334799
CP093528
Alphaproteobacteria
Shinella zoogloeoides XJ20 [CP093528]
99931
99856
-
Thr
CGT
-
¡û
>C231649954
CP123000
Alphaproteobacteria
Neorhizobium petrolearium OS53 [CP123000]
107045
106970
-
Thr
CGT
-
¡û
>C241087349
CP044218
Alphaproteobacteria
Mesorhizobium terrae NIBRBAC000500504 [CP044218]
1081846
1081921
+
Thr
CGT
-
¡û
>C241288033
CP129382
Alphaproteobacteria
Rhizobium sp. SSA_523 SSA5.23 [CP129382]
3302968
3302893
-
Thr
CGT
-
¡û
>C241297207
CP131130
Alphaproteobacteria
Shinella zoogloeoides Teo12 [CP131130]
55024
54949
-
Thr
CGT
-
¡û
>W1610056614
BBWK01000031
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
24978
25053
+
Thr
CGT
[ENA]
¡û
>W1610056722
BBWM01000052
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
98932
99007
+
Thr
CGT
[ENA]
¡û
>W1610056998
BBWS01000023
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
89498
89423
-
Thr
CGT
[ENA]
¡û
>W1610057080
BBWT01000039
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
16842
16917
+
Thr
CGT
[ENA]
¡û
>W1610588105
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
213671
213746
+
Thr
CGT
[ENA]
¡û
>W1610588192
LDQA01000051
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
17414
17489
+
Thr
CGT
[ENA]
¡û
>W1610719211
LLZR01000001
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
429397
429322
-
Thr
CGT
[ENA]
¡û
>W1610784569
LOEX01000093
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
14640
14715
+
Thr
CGT
[ENA]
¡û
>W1710053313
BBWK01000031
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
24978
25053
+
Thr
CGT
[ENA]
¡û
>W1710053421
BBWM01000052
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
98932
99007
+
Thr
CGT
[ENA]
¡û
>W1710053697
BBWS01000023
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
89498
89423
-
Thr
CGT
[ENA]
¡û
>W1710053779
BBWT01000039
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
16842
16917
+
Thr
CGT
[ENA]
¡û
>W1710507966
FMVR01000001
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
677712
677787
+
Thr
CGT
[ENA]
¡û
>W1710524490
FNIT01000008
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
2550
2475
-
Thr
CGT
[ENA]
¡û
>W1710550403
FOFG01000007
Alphaproteobacteria
Faunimonas pinastri A52C2 [FOFG]
172839
172914
+
Thr
CGT
[ENA]
¡û
>W1710707385
LDPZ01000006
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
213671
213746
+
Thr
CGT
[ENA]
¡û
>W1710707472
LDQA01000051
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
17414
17489
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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