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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.307438 (124 seq.)
>W1710875310
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
658413
658489
+
Ile
GAT
[ENA]
¡û
>W1710878216
LMQT01000020
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
391835
391759
-
Ile
GAT
[ENA]
¡û
>W1710878356
LMQW01000048
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
268744
268820
+
Ile
GAT
[ENA]
¡û
>W1710878441
LMQY01000053
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
2194
2118
-
Ile
GAT
[ENA]
¡û
>W1711022106
LQZT01000024
Alphaproteobacteria
Hoeflea olei [LQZT]
2185
2261
+
Ile
GAT
[ENA]
¡û
>PL171000631
CP006375
Alphaproteobacteria
Aureimonas sp. AU20 plasmid:pAU20rrn
5179
5103
-
Ile
GAT
[ENA]
¡û
>W131218161
ATXK01000033
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
1831
1907
+
Ile
GAT
[ENA]
¡û
>w015786
AAPJ01000010
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
24317
24393
+
Ile
GAT
[ENA]
¡û
>w015773
AAPJ01000004
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
187502
187578
+
Ile
GAT
[ENA]
¡û
>w015763
AAPJ01000003
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
349806
349882
+
Ile
GAT
[ENA]
¡û
>W08005568
ABIA02000006
Alphaproteobacteria
Hoeflea phototrophica DFL-43 [ABIA]
105599
105526
-
Ile
GAT
[ENA]
¡û
>W08005588
ABIA02000018
Alphaproteobacteria
Hoeflea phototrophica DFL-43 [ABIA]
17586
17662
+
Ile
GAT
[ENA]
¡û
>WENV183614847
OOEA01003868
[OOEA] marine metagenome; sea ice
316
392
+
Ile
GAT
[ENA]
¡û
>WENV183631425
OOGU01109077
[OOGU] marine metagenome; sea ice
252
176
-
Ile
GAT
[ENA]
¡û
>WENV183802474
PVBE010762556
[PVBE] marine metagenome; water
150
226
+
Ile
GAT
[ENA]
¡û
>WENV170234066
CEQK01002676
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1143
1067
-
Ile
GAT
[ENA]
¡û
>WENV170307917
CESK01027732
[CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1474
1398
-
Ile
GAT
[ENA]
¡û
>WENV170574356
FLYM01028476
[FLYM] hot springs metagenome; Sediment
135
211
+
Ile
GAT
[ENA]
¡û
>C191090911
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
828411
828487
+
Ile
GAT
-
¡û
>C191090934
CP032509
Alphaproteobacteria
Georhizobium profundi WS11 [CP032509]
4252530
4252454
-
Ile
GAT
-
¡û
>W1911411022
NWUC01000019
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
4839
4763
-
Ile
GAT
[ENA]
¡û
>W1911497554
OCPC01000011
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
2239
2315
+
Ile
GAT
[ENA]
¡û
>W1911798355
QYRN01000021
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
2215
2291
+
Ile
GAT
[ENA]
¡û
>W1810192929
PKMZ01000022
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
4447
4371
-
Ile
GAT
[ENA]
¡û
>W1810889092
QURL01000011
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
4581
4505
-
Ile
GAT
[ENA]
¡û
>SRA1014200
SRR023845.36526
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
273
197
-
Ile
GAT
[SRA]
>SRA1014309
SRR023845.83801
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
35
111
+
Ile
GAT
[SRA]
>SRA1014990
SRR023845.412564
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
77
1
-
Ile
GAT
[SRA]
>SRA1015352
SRR023846.28132
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
81
-
Ile
GAT
[SRA]
>SRA1015690
SRR023846.159032
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
11
87
+
Ile
GAT
[SRA]
>SRA1016078
SRR023846.339568
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
240
164
-
Ile
GAT
[SRA]
>SRA1016181
SRR023846.383834
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
240
164
-
Ile
GAT
[SRA]
>SRA1016450
SRR023846.503516
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
240
164
-
Ile
GAT
[SRA]
>C151083071
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
933
1009
+
Ile
GAT
[Ensembl]
¡û
>C151083074
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
140420
140496
+
Ile
GAT
[Ensembl]
¡û
>W2010302667
CABVLD010000013
Alphaproteobacteria
Rhizobium sp. EC-SD404 [CABVLD]
295042
295118
+
Ile
GAT
[ENA]
¡û
>W2010303013
CABVLK010000028
Alphaproteobacteria
Hoeflea sp. EC-HK425 [CABVLK]
329913
329989
+
Ile
GAT
[ENA]
¡û
>W2010437278
JAAAMG010000052
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
2204
2280
+
Ile
GAT
[ENA]
¡û
>W2010437358
JAAAMJ010000056
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
2195
2271
+
Ile
GAT
[ENA]
¡û
>W2010699382
JACHEY010000038
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
3318
3242
-
Ile
GAT
[ENA]
¡û
>W2010724756
JACIDO010000031
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
4471
4395
-
Ile
GAT
[ENA]
¡û
>W2010724801
JACIDP010000017
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1992
2068
+
Ile
GAT
[ENA]
¡û
>W2010724847
JACIDQ010000031
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
4471
4395
-
Ile
GAT
[ENA]
¡û
>W2010725865
JACIEM010000008
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
1988
2064
+
Ile
GAT
[ENA]
¡û
>W2011137769
NWUC01000019
Alphaproteobacteria
Pararhizobium sp. XC0140 [NWUC]
4839
4763
-
Ile
GAT
[ENA]
¡û
>W2011158458
OCPC01000011
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
2239
2315
+
Ile
GAT
[ENA]
¡û
>W2011343323
QYRN01000021
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
2215
2291
+
Ile
GAT
[ENA]
¡û
>W2011666599
SOZD01000021
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
1889
1965
+
Ile
GAT
[ENA]
¡û
>W2012031726
VHLH01000058
Alphaproteobacteria
Pararhizobium sp. BGMRC6574 [VHLH]
4308
4232
-
Ile
GAT
[ENA]
¡û
>W2012141194
VTOM01000048
Alphaproteobacteria
Jiella sp. R10 [VTOM]
2052
2128
+
Ile
GAT
[ENA]
¡û
>W2012146712
VTWH01000007
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
4232
4156
-
Ile
GAT
[ENA]
¡û
>W2012216931
VZDO01000034
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
2148
2224
+
Ile
GAT
[ENA]
¡û
>W2012317716
WEZG01000033
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
2283
2359
+
Ile
GAT
[ENA]
¡û
>W2110026843
BMIQ01000021
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
4155
4079
-
Ile
GAT
[ENA]
¡û
>W2110027731
BMJJ01000029
Alphaproteobacteria
Aureimonas glaciei CGMCC 1.15493 [BMJJ]
258
182
-
Ile
GAT
[ENA]
¡û
>W2110095957
CAJCKW010000032
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
2165
2241
+
Ile
GAT
[ENA]
¡û
>W2110251076
JACSGS010000039
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
2106
2182
+
Ile
GAT
[ENA]
¡û
>W2110515295
JAFMPP010000030
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
4552
4476
-
Ile
GAT
[ENA]
¡û
>W2110515554
JAFMPY010000051
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
2206
2282
+
Ile
GAT
[ENA]
¡û
>W2110556741
JAGJCF010000033
Alphaproteobacteria
Jiella sp. KSK16Y-1 [JAGJCF]
4361
4285
-
Ile
GAT
[ENA]
¡û
>C211029102
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
4579934
4579858
-
Ile
GAT
-
¡û
>C211029105
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
4424491
4424415
-
Ile
GAT
-
¡û
>C211029110
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
3806336
3806260
-
Ile
GAT
-
¡û
>C211124092
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
314645
314721
+
Ile
GAT
-
¡û
>C211124117
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
3147363
3147287
-
Ile
GAT
-
¡û
>C211158642
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
3810746
3810670
-
Ile
GAT
-
¡û
>C211158650
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2514545
2514469
-
Ile
GAT
-
¡û
>C211158665
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
386047
385971
-
Ile
GAT
-
¡û
>C211310725
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
1993301
1993377
+
Ile
GAT
-
¡û
>C211310760
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
979369
979293
-
Ile
GAT
-
¡û
>W2110717207
JAJAVB010000052
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
2110
2186
+
Ile
GAT
[ENA]
¡û
>C231260330
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
593571
593647
+
Ile
GAT
-
¡û
>C231260353
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
4176146
4176070
-
Ile
GAT
-
¡û
>C231260362
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
2776758
2776682
-
Ile
GAT
-
¡û
>C231269641
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
446185
446261
+
Ile
GAT
-
¡û
>C231269658
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
4175112
4175188
+
Ile
GAT
-
¡û
>C231550699
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
5522
5598
+
Ile
GAT
-
¡û
>C231550704
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
1192011
1192087
+
Ile
GAT
-
¡û
>C231550714
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
3180728
3180804
+
Ile
GAT
-
¡û
>C231550716
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
3352453
3352529
+
Ile
GAT
-
¡û
>C231555000
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
2150119
2150043
-
Ile
GAT
-
¡û
>C231555013
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
4356
4280
-
Ile
GAT
-
¡û
>W2310024324
BSNO01000005
Alphaproteobacteria
Rhizobium albus NBRC 110149 [BSNO]
2217
2293
+
Ile
GAT
[ENA]
¡û
>W1511344097
JRFJ01000012
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
3722
3646
-
Ile
GAT
[ENA]
¡û
>W1511347504
JRJG01000181
Alphaproteobacteria
Hoeflea sp. BAL378 [JRJG]
3774
3698
-
Ile
GAT
[ENA]
¡û
>W1511564316
LADQ01000099
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
1245
1321
+
Ile
GAT
[ENA]
¡û
>W1610056489
BBWH01000058
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
2305
2381
+
Ile
GAT
[ENA]
¡û
>W1610056544
BBWI01000062
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
5179
5103
-
Ile
GAT
[ENA]
¡û
>W1610056588
BBWJ01000057
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
2228
2304
+
Ile
GAT
[ENA]
¡û
>W1610056634
BBWK01000104
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4142
4066
-
Ile
GAT
[ENA]
¡û
>W1610056688
BBWL01000066
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
5182
5106
-
Ile
GAT
[ENA]
¡û
>W1610056745
BBWM01000085
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5132
5056
-
Ile
GAT
[ENA]
¡û
>W1610056788
BBWN01000045
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
3489
3413
-
Ile
GAT
[ENA]
¡û
>W1610056853
BBWP01000017
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
3688
3612
-
Ile
GAT
[ENA]
¡û
>W1610056919
BBWQ01000019
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
3724
3648
-
Ile
GAT
[ENA]
¡û
>W1610056931
BBWR01000001
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
2063
2139
+
Ile
GAT
[ENA]
¡û
>W1610057030
BBWS01000070
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
5127
5051
-
Ile
GAT
[ENA]
¡û
>W1610057085
BBWT01000073
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
5142
5066
-
Ile
GAT
[ENA]
¡û
>W1610588135
LDPZ01000029
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
2444
2368
-
Ile
GAT
[ENA]
¡û
>W1610588185
LDQA01000032
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
2065
1989
-
Ile
GAT
[ENA]
¡û
>W1610737656
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
658413
658489
+
Ile
GAT
[ENA]
¡û
>W1610740562
LMQT01000020
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
391835
391759
-
Ile
GAT
[ENA]
¡û
>W1610740702
LMQW01000048
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
268744
268820
+
Ile
GAT
[ENA]
¡û
>W1610740787
LMQY01000053
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
2194
2118
-
Ile
GAT
[ENA]
¡û
>WENV081580
ABEF01051492
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1787
1863
+
Ile
GAT
[ENA]
>W1710015511
AQQS01000074
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
404
480
+
Ile
GAT
[ENA]
¡û
>W1710053188
BBWH01000058
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
2305
2381
+
Ile
GAT
[ENA]
¡û
>W1710053243
BBWI01000062
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
5179
5103
-
Ile
GAT
[ENA]
¡û
>W1710053287
BBWJ01000057
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
2228
2304
+
Ile
GAT
[ENA]
¡û
>W1710053333
BBWK01000104
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
4142
4066
-
Ile
GAT
[ENA]
¡û
>W1710053387
BBWL01000066
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
5182
5106
-
Ile
GAT
[ENA]
¡û
>W1710053444
BBWM01000085
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
5132
5056
-
Ile
GAT
[ENA]
¡û
>W1710053487
BBWN01000045
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
3489
3413
-
Ile
GAT
[ENA]
¡û
>W1710053552
BBWP01000017
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
3688
3612
-
Ile
GAT
[ENA]
¡û
>W1710053618
BBWQ01000019
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
3724
3648
-
Ile
GAT
[ENA]
¡û
>W1710053630
BBWR01000001
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
2063
2139
+
Ile
GAT
[ENA]
¡û
>W1710053729
BBWS01000070
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
5127
5051
-
Ile
GAT
[ENA]
¡û
>W1710053784
BBWT01000073
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
5142
5066
-
Ile
GAT
[ENA]
¡û
>W1710524501
FNIT01000025
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
954
1030
+
Ile
GAT
[ENA]
¡û
>W1710561287
FOOA01000050
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
2277
2201
-
Ile
GAT
[ENA]
¡û
>W1710588155
FQZC01000007
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
3724
3648
-
Ile
GAT
[ENA]
¡û
>W1710606305
FWXR01000045
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
2142
2218
+
Ile
GAT
[ENA]
¡û
>W1710707415
LDPZ01000029
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
2444
2368
-
Ile
GAT
[ENA]
¡û
>W1710707465
LDQA01000032
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
2065
1989
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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