This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.872623 (62 seq.)
>W131160095
AQWH01000018
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
94878
94951
+
Cys
GCA
[ENA]
¡û
>C171105032
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3236077
3236004
-
Cys
GCA
-
¡û
>w018779
AATP01000007
Alphaproteobacteria
Fulvimarina pelagi HTCC2506 [AATP]
120351
120276
-
Cys
GCA
[ENA]
¡û
>W141180670
AYGY02000104
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
25192
25265
+
Cys
GCA
[ENA]
¡û
>WENV183625875
OOGG01062400
[OOGG] marine metagenome; sea ice
151
78
-
Cys
GCA
[ENA]
¡û
>ENV08000058
ABLU01094899
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
40
113
+
Cys
GCA
[ENA]
¡û
>WENV170190974
CEPC01196015
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6
79
+
Cys
GCA
[ENA]
¡û
>WENV170499931
CEVT01273114
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
256
329
+
Cys
GCA
[ENA]
¡û
>WENV170790303
MDSV01064107
[MDSV] marine metagenome; seawater
8363
8290
-
Cys
GCA
[ENA]
¡û
>WENV170822305
MDSY01037852
[MDSY] marine metagenome; seawater
1112
1039
-
Cys
GCA
[ENA]
¡û
>WENV170856102
MDTA01217650
[MDTA] marine metagenome; seawater
585
512
-
Cys
GCA
[ENA]
¡û
>W1911798312
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
253179
253252
+
Cys
GCA
[ENA]
¡û
>W1810192890
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
863338
863411
+
Cys
GCA
[ENA]
¡û
>W1810365572
PVUG01000005
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
131397
131324
-
Cys
GCA
[ENA]
¡û
>W1810594565
QGDB01000002
Alphaproteobacteria
Falsochrobactrum shanghaiense HN4 [QGDB]
327213
327140
-
Cys
GCA
[ENA]
¡û
>W1810889086
QURL01000007
Alphaproteobacteria
Fulvimarina endophytica 85 [QURL]
50948
51021
+
Cys
GCA
[ENA]
¡û
>W2010437237
JAAAMG010000001
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
549629
549556
-
Cys
GCA
[ENA]
¡û
>W2010636390
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
730870
730797
-
Cys
GCA
[ENA]
¡û
>W2010724764
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1138248
1138175
-
Cys
GCA
[ENA]
¡û
>W2010725252
JACIDZ010000004
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
191590
191663
+
Cys
GCA
[ENA]
¡û
>W2011343280
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
253179
253252
+
Cys
GCA
[ENA]
¡û
>W2011666563
SOZD01000001
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
93513
93440
-
Cys
GCA
[ENA]
¡û
>W2011666587
SOZD01000005
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
335766
335693
-
Cys
GCA
[ENA]
¡û
>W2011976164
VCLB01000009
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
169552
169479
-
Cys
GCA
[ENA]
¡û
>W2012079844
VLJG01000001
Alphaproteobacteria
Aminobacter sp. J44 [VLJG]
15395
15322
-
Cys
GCA
[ENA]
¡û
>W2012146684
VTWH01000002
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
744360
744433
+
Cys
GCA
[ENA]
¡û
>W2012216893
VZDO01000002
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
351185
351112
-
Cys
GCA
[ENA]
¡û
>W2012469007
WVVV01000002
Alphaproteobacteria
Chelativorans sp. ZYF759 [WVVV]
305214
305141
-
Cys
GCA
[ENA]
¡û
>W2110095917
CAJCKW010000002
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
163499
163426
-
Cys
GCA
[ENA]
¡û
>W2110319023
JADGMQ010000003
Alphaproteobacteria
Aquamicrobium sp. cd-1 [JADGMQ]
189878
189951
+
Cys
GCA
[ENA]
¡û
>W2110515266
JAFMPP010000006
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
170559
170632
+
Cys
GCA
[ENA]
¡û
>W2110515514
JAFMPY010000001
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
362583
362656
+
Cys
GCA
[ENA]
¡û
>W2110556717
JAGJCF010000003
Alphaproteobacteria
Jiella sp. KSK16Y-1 [JAGJCF]
360894
360821
-
Cys
GCA
[ENA]
¡û
>C211011745
AP023361
Alphaproteobacteria
Terrihabitans soli IZ6 [AP023361]
1353560
1353487
-
Cys
GCA
-
¡û
>C211124123
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
2550552
2550479
-
Cys
GCA
-
¡û
>C211158656
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2090285
2090212
-
Cys
GCA
-
¡û
>C211232440
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2416567
2416494
-
Cys
GCA
-
¡û
>C211310746
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
3351653
3351726
+
Cys
GCA
-
¡û
>W2110717179
JAJAVB010000010
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
63415
63342
-
Cys
GCA
[ENA]
¡û
>C231260368
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
2284346
2284273
-
Cys
GCA
-
¡û
>C241169414
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
2599955
2600028
+
Cys
GCA
-
¡û
>C241169482
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3828844
3828771
-
Cys
GCA
-
¡û
>W1511344064
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
1455461
1455388
-
Cys
GCA
[ENA]
¡û
>C161070361
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1706817
1706890
+
Cys
GCA
[Ensembl]
¡û
>W1610056593
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
17033
17106
+
Cys
GCA
[ENA]
¡û
>W1610056719
BBWM01000036
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
62339
62266
-
Cys
GCA
[ENA]
¡û
>W1610056812
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
427546
427473
-
Cys
GCA
[ENA]
¡û
>W1610056910
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
42340
42267
-
Cys
GCA
[ENA]
¡û
>W1610057008
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
93798
93725
-
Cys
GCA
[ENA]
¡û
>W1610588095
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
125747
125820
+
Cys
GCA
[ENA]
¡û
>W1610588149
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
1889
1962
+
Cys
GCA
[ENA]
¡û
>W1710015477
AQQS01000005
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
94066
93993
-
Cys
GCA
[ENA]
¡û
>W1710053292
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
17033
17106
+
Cys
GCA
[ENA]
¡û
>W1710053418
BBWM01000036
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
62339
62266
-
Cys
GCA
[ENA]
¡û
>W1710053511
BBWO01000005
Alphaproteobacteria
Fulvimarina pelagi [BBWO]
427546
427473
-
Cys
GCA
[ENA]
¡û
>W1710053609
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
42340
42267
-
Cys
GCA
[ENA]
¡û
>W1710053707
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
93798
93725
-
Cys
GCA
[ENA]
¡û
>W1710524467
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
384250
384177
-
Cys
GCA
[ENA]
¡û
>W1710588135
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
400282
400355
+
Cys
GCA
[ENA]
¡û
>W1710606279
FWXR01000004
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
246164
246091
-
Cys
GCA
[ENA]
¡û
>W1710707375
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
125747
125820
+
Cys
GCA
[ENA]
¡û
>W1710707429
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
1889
1962
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK