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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.544142 (39 seq.)
>W1710892406
LNDS01000011
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
63030
63103
+
Cys
GCA
[ENA]
¡û
>W1710893517
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
80859
80786
-
Cys
GCA
[ENA]
¡û
>W1711262639
LYXZ01000012
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
91434
91507
+
Cys
GCA
[ENA]
¡û
>C171115935
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
4954835
4954908
+
Cys
GCA
-
¡û
>WENV180256875
OBEQ010860855
[OBEQ] groundwater metagenome; groundwater
1146
1073
-
Cys
GCA
[ENA]
¡û
>WENV180266923
OBEQ011799241
[OBEQ] groundwater metagenome; groundwater
83
10
-
Cys
GCA
[ENA]
¡û
>WENV180295915
OBIZ01443264
[OBIZ] soil metagenome; soil
196
123
-
Cys
GCA
[ENA]
¡û
>WENV180343811
OBLK01099479
[OBLK] soil metagenome; Clay
303
376
+
Cys
GCA
[ENA]
¡û
>WENV180351969
OBLQ010137535
[OBLQ] soil metagenome; soil
632
559
-
Cys
GCA
[ENA]
¡û
>W141151396
AXBA01000036
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
6454
6381
-
Cys
GCA
[ENA]
¡û
>W141180670
AYGY02000104
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
25192
25265
+
Cys
GCA
[ENA]
¡û
>WENV170661708
JXWV01095265
[JXWV] soil metagenome; rice field; organic FYM Plot
191
118
-
Cys
GCA
[ENA]
¡û
>WENV170711423
LNFM01005191
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13124
13197
+
Cys
GCA
[ENA]
¡û
>W1911653526
QDFX01000011
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
54213
54140
-
Cys
GCA
[ENA]
¡û
>W1911798312
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
253179
253252
+
Cys
GCA
[ENA]
¡û
>W1810192890
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
863338
863411
+
Cys
GCA
[ENA]
¡û
>W1810325503
PUEJ01000005
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
656173
656100
-
Cys
GCA
[ENA]
¡û
>W2010636390
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
730870
730797
-
Cys
GCA
[ENA]
¡û
>W2010724764
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1138248
1138175
-
Cys
GCA
[ENA]
¡û
>W2011237085
QDFX01000011
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
54213
54140
-
Cys
GCA
[ENA]
¡û
>W2011343280
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
253179
253252
+
Cys
GCA
[ENA]
¡û
>W2011355065
RAQD01000001
Alphaproteobacteria
Pseudorhodoplanes sinuspersici CECT 8374 [RAQD]
1485843
1485916
+
Cys
GCA
[ENA]
¡û
>W2011655008
SOBM01000008
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
146431
146504
+
Cys
GCA
[ENA]
¡û
>W2011666563
SOZD01000001
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
93513
93440
-
Cys
GCA
[ENA]
¡û
>W2011666587
SOZD01000005
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
335766
335693
-
Cys
GCA
[ENA]
¡û
>W2110019166
BMCP01000002
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
876831
876758
-
Cys
GCA
[ENA]
¡û
>W2110019316
BMCT01000001
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
1566710
1566637
-
Cys
GCA
[ENA]
¡û
>W2110555369
JAGIPY010000008
Alphaproteobacteria
Labrys sp. LIt4 [JAGIPY]
142112
142185
+
Cys
GCA
[ENA]
¡û
>C201133569
CP043489
Alphaproteobacteria
Labrys neptuniae KNU-23 [CP043488, CP043489]
12957
12884
-
Cys
GCA
-
¡û
>C211158656
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2090285
2090212
-
Cys
GCA
-
¡û
>C211310746
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
3351653
3351726
+
Cys
GCA
-
¡û
>W2110717179
JAJAVB010000010
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
63415
63342
-
Cys
GCA
[ENA]
¡û
>C241169482
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3828844
3828771
-
Cys
GCA
-
¡û
>W2310026110
BSPC01000028
Alphaproteobacteria
Labrys miyagiensis NBRC 101365 [BSPC]
112169
112242
+
Cys
GCA
[ENA]
¡û
>W1610752672
LNDS01000011
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
63030
63103
+
Cys
GCA
[ENA]
¡û
>W1610753783
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
80859
80786
-
Cys
GCA
[ENA]
¡û
>WENV077413
AAFX01034130
Soil microbial communities from Minnesota Farm
908
833
-
Cys
GCA
[ENA]
>W1611024506
LYXZ01000012
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
91434
91507
+
Cys
GCA
[ENA]
¡û
>W1710524467
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
384250
384177
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK