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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55191 (23 seq.)
>W1710875327
LMOH01000014
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
17161
17250
+
Ser
GGA
[ENA]
¡û
>W131182193
ARQE01000003
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
419224
419313
+
Ser
GGA
[ENA]
¡û
>WENV181402716
OFTY01026438
[OFTY] sludge metagenome; sludge
633
544
-
Ser
GGA
[ENA]
¡û
>WENV170711718
LNFM01006738
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18533
18444
-
Ser
GGA
[ENA]
¡û
>W1911653533
QDFX01000016
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
61564
61653
+
Ser
GGA
[ENA]
¡û
>W1911798346
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
343528
343439
-
Ser
GGA
[ENA]
¡û
>W2010724740
JACIDO010000003
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
498348
498437
+
Ser
GGA
[ENA]
¡û
>W2010724798
JACIDP010000010
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
10174
10085
-
Ser
GGA
[ENA]
¡û
>W2010724831
JACIDQ010000003
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
498348
498437
+
Ser
GGA
[ENA]
¡û
>W2011237092
QDFX01000016
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
61564
61653
+
Ser
GGA
[ENA]
¡û
>W2011343314
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
343528
343439
-
Ser
GGA
[ENA]
¡û
>W2110023737
BMGG01000008
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
161258
161347
+
Ser
GGA
[ENA]
¡û
>W2110095935
CAJCKW010000005
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
299266
299355
+
Ser
GGA
[ENA]
¡û
>C211158637
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
3707276
3707365
+
Ser
GGA
-
¡û
>C211310759
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
1560301
1560212
-
Ser
GGA
-
¡û
>W1511344078
JRFJ01000002
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
56704
56615
-
Ser
GGA
[ENA]
¡û
>W1610056547
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
275454
275543
+
Ser
GGA
[ENA]
¡û
>W1610057058
BBWT01000017
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
53946
53857
-
Ser
GGA
[ENA]
¡û
>W1610737673
LMOH01000014
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
17161
17250
+
Ser
GGA
[ENA]
¡û
>W1710053246
BBWJ01000004
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
275454
275543
+
Ser
GGA
[ENA]
¡û
>W1710053757
BBWT01000017
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
53946
53857
-
Ser
GGA
[ENA]
¡û
>W1710524493
FNIT01000011
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
10401
10312
-
Ser
GGA
[ENA]
¡û
>W1710561283
FOOA01000031
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
10195
10106
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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