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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320944 (58 seq.)
>W1710875305
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
420924
421000
+
Pro
GGG
[ENA]
¡û
>W131182183
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
570950
570874
-
Pro
GGG
[ENA]
¡û
>W131218150
ATXK01000008
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
27964
27888
-
Pro
GGG
[ENA]
¡û
>w015762
AAPJ01000003
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
305497
305575
+
Pro
GGG
[ENA]
¡û
>WENV170269003
CERH01021616
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
878
802
-
Pro
GGG
[ENA]
¡û
>WENV170672531
LAZR01000253
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
11715
11791
+
Pro
GGG
[ENA]
¡û
>W1911798314
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
435400
435476
+
Pro
GGG
[ENA]
¡û
>W1810192888
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
502349
502425
+
Pro
GGG
[ENA]
¡û
>W2010699375
JACHEY010000012
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
118145
118221
+
Pro
GGG
[ENA]
¡û
>W2010724728
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
320520
320596
+
Pro
GGG
[ENA]
¡û
>W2010724766
JACIDP010000001
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
1098383
1098307
-
Pro
GGG
[ENA]
¡û
>W2010724819
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
320520
320596
+
Pro
GGG
[ENA]
¡û
>W2011343282
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
435400
435476
+
Pro
GGG
[ENA]
¡û
>W2011666553
SOZD01000001
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
185640
185716
+
Pro
GGG
[ENA]
¡û
>W2011666586
SOZD01000005
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
485266
485342
+
Pro
GGG
[ENA]
¡û
>W2110095928
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
220318
220394
+
Pro
GGG
[ENA]
¡û
>W2110251052
JACSGS010000006
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
189564
189640
+
Pro
GGG
[ENA]
¡û
>W2110309562
JADDXW010000009
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
148347
148423
+
Pro
GGG
[ENA]
¡û
>W2110515278
JAFMPP010000013
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
95574
95498
-
Pro
GGG
[ENA]
¡û
>W2110515522
JAFMPY010000003
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
373320
373396
+
Pro
GGG
[ENA]
¡û
>C211124105
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
1857364
1857440
+
Pro
GGG
-
¡û
>C211158653
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2335597
2335521
-
Pro
GGG
-
¡û
>C211310756
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2432596
2432520
-
Pro
GGG
-
¡û
>W2110717167
JAJAVB010000002
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
55647
55571
-
Pro
GGG
[ENA]
¡û
>C231260365
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
2569632
2569556
-
Pro
GGG
-
¡û
>W1511344096
JRFJ01000011
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
6402
6478
+
Pro
GGG
[ENA]
¡û
>C161003874
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2789214
2789138
-
Pro
GGG
[Ensembl]
¡û
>W1610056519
BBWI01000021
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
340334
340258
-
Pro
GGG
[ENA]
¡û
>W1610056561
BBWJ01000019
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
43941
44017
+
Pro
GGG
[ENA]
¡û
>W1610056595
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
56279
56355
+
Pro
GGG
[ENA]
¡û
>W1610056670
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
165263
165339
+
Pro
GGG
[ENA]
¡û
>W1610056733
BBWM01000057
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
105207
105283
+
Pro
GGG
[ENA]
¡û
>W1610056772
BBWN01000021
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
3261
3185
-
Pro
GGG
[ENA]
¡û
>W1610056863
BBWP01000023
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
41941
41865
-
Pro
GGG
[ENA]
¡û
>W1610056916
BBWQ01000018
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
171564
171488
-
Pro
GGG
[ENA]
¡û
>W1610056938
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
21265
21189
-
Pro
GGG
[ENA]
¡û
>W1610057014
BBWS01000048
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
167692
167768
+
Pro
GGG
[ENA]
¡û
>W1610057042
BBWT01000012
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
58483
58559
+
Pro
GGG
[ENA]
¡û
>W1610588093
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
29359
29435
+
Pro
GGG
[ENA]
¡û
>W1610588167
LDQA01000017
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
4345
4269
-
Pro
GGG
[ENA]
¡û
>W1610737651
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
420924
421000
+
Pro
GGG
[ENA]
¡û
>W1710053218
BBWI01000021
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
340334
340258
-
Pro
GGG
[ENA]
¡û
>W1710053260
BBWJ01000019
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
43941
44017
+
Pro
GGG
[ENA]
¡û
>W1710053294
BBWK01000002
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
56279
56355
+
Pro
GGG
[ENA]
¡û
>W1710053369
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
165263
165339
+
Pro
GGG
[ENA]
¡û
>W1710053432
BBWM01000057
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
105207
105283
+
Pro
GGG
[ENA]
¡û
>W1710053471
BBWN01000021
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
3261
3185
-
Pro
GGG
[ENA]
¡û
>W1710053562
BBWP01000023
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
41941
41865
-
Pro
GGG
[ENA]
¡û
>W1710053615
BBWQ01000018
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
171564
171488
-
Pro
GGG
[ENA]
¡û
>W1710053637
BBWR01000002
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
21265
21189
-
Pro
GGG
[ENA]
¡û
>W1710053713
BBWS01000048
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
167692
167768
+
Pro
GGG
[ENA]
¡û
>W1710053741
BBWT01000012
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
58483
58559
+
Pro
GGG
[ENA]
¡û
>W1710524469
FNIT01000003
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
344385
344309
-
Pro
GGG
[ENA]
¡û
>W1710561257
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
243365
243289
-
Pro
GGG
[ENA]
¡û
>W1710588132
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
211470
211546
+
Pro
GGG
[ENA]
¡û
>W1710601597
FUXL01000003
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
365314
365390
+
Pro
GGG
[ENA]
¡û
>W1710707373
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
29359
29435
+
Pro
GGG
[ENA]
¡û
>W1710707447
LDQA01000017
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
4345
4269
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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