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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207415 (41 seq.)
>W1710875324
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
23668
23752
+
Tyr
GTA
[ENA]
¡û
>W1710878192
LMQT01000002
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
145800
145884
+
Tyr
GTA
[ENA]
¡û
>W1710878689
LMRD01000011
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
6824
6740
-
Tyr
GTA
[ENA]
¡û
>W131182200
ARQE01000004
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
2006
1922
-
Tyr
GTA
[ENA]
¡û
>W1911798330
QYRN01000004
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
289595
289679
+
Tyr
GTA
[ENA]
¡û
>W2010724715
JACIDO010000001
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
880698
880782
+
Tyr
GTA
[ENA]
¡û
>W2010724786
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
240017
239933
-
Tyr
GTA
[ENA]
¡û
>W2010724812
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
133137
133053
-
Tyr
GTA
[ENA]
¡û
>W2011343298
QYRN01000004
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
289595
289679
+
Tyr
GTA
[ENA]
¡û
>W2012141175
VTOM01000011
Alphaproteobacteria
Jiella sp. R10 [VTOM]
171977
172061
+
Tyr
GTA
[ENA]
¡û
>W2012146692
VTWH01000002
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
1004857
1004773
-
Tyr
GTA
[ENA]
¡û
>W2110095946
CAJCKW010000010
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
75605
75521
-
Tyr
GTA
[ENA]
¡û
>C211124126
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
2291937
2291853
-
Tyr
GTA
-
¡û
>C211158645
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
3140120
3140036
-
Tyr
GTA
-
¡û
>C231260356
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
3509193
3509109
-
Tyr
GTA
-
¡û
>C231550731
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
3493169
3493085
-
Tyr
GTA
-
¡û
>W1511344071
JRFJ01000002
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
608064
608148
+
Tyr
GTA
[ENA]
¡û
>W1610056480
BBWH01000044
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124115
124199
+
Tyr
GTA
[ENA]
¡û
>W1610056573
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
701
617
-
Tyr
GTA
[ENA]
¡û
>W1610056691
BBWM01000001
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
1167
1083
-
Tyr
GTA
[ENA]
¡û
>W1610056890
BBWQ01000002
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
158396
158480
+
Tyr
GTA
[ENA]
¡û
>W1610056963
BBWR01000017
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
216424
216508
+
Tyr
GTA
[ENA]
¡û
>W1610056982
BBWS01000010
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
1046
962
-
Tyr
GTA
[ENA]
¡û
>W1610057061
BBWT01000019
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
965
881
-
Tyr
GTA
[ENA]
¡û
>W1610588111
LDPZ01000013
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
38052
37968
-
Tyr
GTA
[ENA]
¡û
>W1610588158
LDQA01000010
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
1066
982
-
Tyr
GTA
[ENA]
¡û
>W1610737670
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
23668
23752
+
Tyr
GTA
[ENA]
¡û
>W1610740538
LMQT01000002
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
145800
145884
+
Tyr
GTA
[ENA]
¡û
>W1610741035
LMRD01000011
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
6824
6740
-
Tyr
GTA
[ENA]
¡û
>W1710053179
BBWH01000044
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
124115
124199
+
Tyr
GTA
[ENA]
¡û
>W1710053272
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
701
617
-
Tyr
GTA
[ENA]
¡û
>W1710053390
BBWM01000001
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
1167
1083
-
Tyr
GTA
[ENA]
¡û
>W1710053589
BBWQ01000002
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
158396
158480
+
Tyr
GTA
[ENA]
¡û
>W1710053662
BBWR01000017
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
216424
216508
+
Tyr
GTA
[ENA]
¡û
>W1710053681
BBWS01000010
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
1046
962
-
Tyr
GTA
[ENA]
¡û
>W1710053760
BBWT01000019
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
965
881
-
Tyr
GTA
[ENA]
¡û
>W1710524480
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
301317
301401
+
Tyr
GTA
[ENA]
¡û
>W1710561248
FOOA01000001
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
2361
2277
-
Tyr
GTA
[ENA]
¡û
>W1710588112
FQZC01000001
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
571320
571404
+
Tyr
GTA
[ENA]
¡û
>W1710707391
LDPZ01000013
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
38052
37968
-
Tyr
GTA
[ENA]
¡û
>W1710707438
LDQA01000010
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
1066
982
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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