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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = GTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320975 (8 seq.)
>W1710878648
LMRD01000001
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
69505
69581
+
His
GTG
[ENA]
¡û
>W2010724796
JACIDP010000007
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
3901
3825
-
His
GTG
[ENA]
¡û
>W2012141178
VTOM01000012
Alphaproteobacteria
Jiella sp. R10 [VTOM]
157603
157679
+
His
GTG
[ENA]
¡û
>C231550701
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
765182
765258
+
His
GTG
-
¡û
>W1610056619
BBWK01000051
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
2895
2819
-
His
GTG
[ENA]
¡û
>W1610740994
LMRD01000001
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
69505
69581
+
His
GTG
[ENA]
¡û
>W1710053318
BBWK01000051
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
2895
2819
-
His
GTG
[ENA]
¡û
>W1710524491
FNIT01000009
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
4129
4053
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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