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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157606 (24 seq.)
>W131182186
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
279133
279050
-
Leu
TAG
[ENA]
¡û
>W2010724790
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
160475
160392
-
Leu
TAG
[ENA]
¡û
>W2110026801
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
247019
247102
+
Leu
TAG
[ENA]
¡û
>W2110440338
JAEQNC010000016
Alphaproteobacteria
Rhizobium sp. KVB221 [JAEQNC]
82521
82438
-
Leu
TAG
[ENA]
¡û
>C161003878
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2610009
2609926
-
Leu
TAG
[Ensembl]
¡û
>W1610056523
BBWI01000021
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
161129
161046
-
Leu
TAG
[ENA]
¡û
>W1610056559
BBWJ01000018
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
10369
10452
+
Leu
TAG
[ENA]
¡û
>W1610056622
BBWK01000062
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
57943
58026
+
Leu
TAG
[ENA]
¡û
>W1610056673
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
276655
276738
+
Leu
TAG
[ENA]
¡û
>W1610056714
BBWM01000035
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
185140
185057
-
Leu
TAG
[ENA]
¡û
>W1610057009
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
60774
60691
-
Leu
TAG
[ENA]
¡û
>W1610057046
BBWT01000014
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
172939
173022
+
Leu
TAG
[ENA]
¡û
>W1610588096
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
158772
158855
+
Leu
TAG
[ENA]
¡û
>W1610588150
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
34914
34997
+
Leu
TAG
[ENA]
¡û
>W1710053222
BBWI01000021
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
161129
161046
-
Leu
TAG
[ENA]
¡û
>W1710053258
BBWJ01000018
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
10369
10452
+
Leu
TAG
[ENA]
¡û
>W1710053321
BBWK01000062
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
57943
58026
+
Leu
TAG
[ENA]
¡û
>W1710053372
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
276655
276738
+
Leu
TAG
[ENA]
¡û
>W1710053413
BBWM01000035
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
185140
185057
-
Leu
TAG
[ENA]
¡û
>W1710053708
BBWS01000044
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
60774
60691
-
Leu
TAG
[ENA]
¡û
>W1710053745
BBWT01000014
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
172939
173022
+
Leu
TAG
[ENA]
¡û
>W1710524497
FNIT01000015
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
58357
58440
+
Leu
TAG
[ENA]
¡û
>W1710707376
LDPZ01000004
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
158772
158855
+
Leu
TAG
[ENA]
¡û
>W1710707430
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
34914
34997
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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