This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523920 (33 seq.)
>W1710875307
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530863
530938
+
Arg
TCT
[ENA]
¡û
>W1710878664
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
723690
723615
-
Arg
TCT
[ENA]
¡û
>W131218132
ATXK01000004
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
138049
138124
+
Arg
TCT
[ENA]
¡û
>w015766
AAPJ01000003
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
451697
451774
+
Arg
TCT
[ENA]
¡û
>WENV170268979
CERH01017334
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
208
-
Arg
TCT
[ENA]
¡û
>W1810192905
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
664257
664182
-
Arg
TCT
[ENA]
¡û
>SRA1014540
SRR023845.189585
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
83
+
Arg
TCT
[SRA]
>SRA1014608
SRR023845.224551
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
25
100
+
Arg
TCT
[SRA]
>W2010437275
JAAAMG010000031
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
301
226
-
Arg
TCT
[ENA]
¡û
>W2010699368
JACHEY010000008
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
146170
146095
-
Arg
TCT
[ENA]
¡û
>W2010724730
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
430542
430617
+
Arg
TCT
[ENA]
¡û
>W2010724785
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
299727
299652
-
Arg
TCT
[ENA]
¡û
>W2010724821
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
430542
430617
+
Arg
TCT
[ENA]
¡û
>W2010725759
JACIEK010000008
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
160336
160411
+
Arg
TCT
[ENA]
¡û
>W2012141165
VTOM01000007
Alphaproteobacteria
Jiella sp. R10 [VTOM]
160615
160540
-
Arg
TCT
[ENA]
¡û
>W2012146686
VTWH01000002
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
755053
755128
+
Arg
TCT
[ENA]
¡û
>W2012216907
VZDO01000004
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
336182
336107
-
Arg
TCT
[ENA]
¡û
>W2012317684
WEZG01000002
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
540663
540738
+
Arg
TCT
[ENA]
¡û
>W2110026815
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
670699
670624
-
Arg
TCT
[ENA]
¡û
>W2110095930
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
311397
311472
+
Arg
TCT
[ENA]
¡û
>W2110251068
JACSGS010000012
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
42085
42010
-
Arg
TCT
[ENA]
¡û
>C231550737
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
2349378
2349303
-
Arg
TCT
-
¡û
>C231554978
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
3301063
3301138
+
Arg
TCT
-
¡û
>W1610056611
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167792
167867
+
Arg
TCT
[ENA]
¡û
>W1610056765
BBWN01000016
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
215606
215531
-
Arg
TCT
[ENA]
¡û
>W1610056851
BBWP01000016
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
198808
198733
-
Arg
TCT
[ENA]
¡û
>W1610737653
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530863
530938
+
Arg
TCT
[ENA]
¡û
>W1610741010
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
723690
723615
-
Arg
TCT
[ENA]
¡û
>W1710053310
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167792
167867
+
Arg
TCT
[ENA]
¡û
>W1710053464
BBWN01000016
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
215606
215531
-
Arg
TCT
[ENA]
¡û
>W1710053550
BBWP01000016
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
198808
198733
-
Arg
TCT
[ENA]
¡û
>W1710524479
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
241607
241682
+
Arg
TCT
[ENA]
¡û
>W1710561259
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
133343
133268
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK