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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319712 (97 seq.)
>W1710875307
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530863
530938
+
Arg
TCT
[ENA]
¡û
>W1710878664
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
723690
723615
-
Arg
TCT
[ENA]
¡û
>W1711334237
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
553690
553615
-
Arg
TCT
[ENA]
¡û
>W1711334283
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
560343
560268
-
Arg
TCT
[ENA]
¡û
>W131218132
ATXK01000004
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
138049
138124
+
Arg
TCT
[ENA]
¡û
>W131231504
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
771101
771026
-
Arg
TCT
[ENA]
¡û
>w015766
AAPJ01000003
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
451697
451774
+
Arg
TCT
[ENA]
¡û
>WENV181162785
OEIO01014218
[OEIO] marine metagenome; sea ice
644
569
-
Arg
TCT
[ENA]
¡û
>WENV183630956
OOGU01012901
[OOGU] marine metagenome; sea ice
803
878
+
Arg
TCT
[ENA]
¡û
>WENV170268979
CERH01017334
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
283
208
-
Arg
TCT
[ENA]
¡û
>WENV170672340
LAZR01000065
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
149820
149895
+
Arg
TCT
[ENA]
¡û
>WENV170899672
MDTD01143056
[MDTD] marine metagenome; seawater
3458
3533
+
Arg
TCT
[ENA]
¡û
>W141562729
JHZK01000015
Alphaproteobacteria
Afifella pfennigii DSM 17143 [JHZK]
30674
30749
+
Arg
TCT
[ENA]
¡û
>W1910501824
FYAU01000035
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
151427
151502
+
Arg
TCT
[ENA]
¡û
>W1910501849
FYAV01000035
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
25775
25850
+
Arg
TCT
[ENA]
¡û
>W1910501926
FYAW01000043
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
2074
1999
-
Arg
TCT
[ENA]
¡û
>W1911143663
NPBC01000013
Alphaproteobacteria
Afifella marina DSM 2698 [NPBC]
81892
81817
-
Arg
TCT
[ENA]
¡û
>W1911494903
OBML01000013
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
30375
30300
-
Arg
TCT
[ENA]
¡û
>W1911798316
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
536267
536342
+
Arg
TCT
[ENA]
¡û
>W1810192905
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
664257
664182
-
Arg
TCT
[ENA]
¡û
>SRA1014540
SRR023845.189585
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
8
83
+
Arg
TCT
[SRA]
>SRA1014608
SRR023845.224551
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
25
100
+
Arg
TCT
[SRA]
>W2010421556
FYAU01000035
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
151427
151502
+
Arg
TCT
[ENA]
¡û
>W2010421581
FYAV01000035
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
25775
25850
+
Arg
TCT
[ENA]
¡û
>W2010421658
FYAW01000043
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
2074
1999
-
Arg
TCT
[ENA]
¡û
>W2010437275
JAAAMG010000031
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
301
226
-
Arg
TCT
[ENA]
¡û
>W2010699368
JACHEY010000008
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
146170
146095
-
Arg
TCT
[ENA]
¡û
>W2010724730
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
430542
430617
+
Arg
TCT
[ENA]
¡û
>W2010724785
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
299727
299652
-
Arg
TCT
[ENA]
¡û
>W2010724821
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
430542
430617
+
Arg
TCT
[ENA]
¡û
>W2010725759
JACIEK010000008
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
160336
160411
+
Arg
TCT
[ENA]
¡û
>W2010752324
JACMIA010000001
Alphaproteobacteria
Stappia sp. 28M-7 [JACMIA]
2700937
2700862
-
Arg
TCT
[ENA]
¡û
>W2011017266
NPBC01000013
Alphaproteobacteria
Afifella marina DSM 2698 [NPBC]
81892
81817
-
Arg
TCT
[ENA]
¡û
>W2011155807
OBML01000013
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
30375
30300
-
Arg
TCT
[ENA]
¡û
>W2011343284
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
536267
536342
+
Arg
TCT
[ENA]
¡û
>W2011354590
RAPU01000001
Alphaproteobacteria
Stappia sp. ARW1T [RAPU]
1020912
1020987
+
Arg
TCT
[ENA]
¡û
>W2011525002
SAUF01000005
Alphaproteobacteria
Afifella sp. JA968 [SAUF]
806371
806296
-
Arg
TCT
[ENA]
¡û
>W2011666572
SOZD01000002
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
93719
93644
-
Arg
TCT
[ENA]
¡û
>W2012141165
VTOM01000007
Alphaproteobacteria
Jiella sp. R10 [VTOM]
160615
160540
-
Arg
TCT
[ENA]
¡û
>W2012146686
VTWH01000002
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
755053
755128
+
Arg
TCT
[ENA]
¡û
>W2012216907
VZDO01000004
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
336182
336107
-
Arg
TCT
[ENA]
¡û
>W2012317684
WEZG01000002
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
540663
540738
+
Arg
TCT
[ENA]
¡û
>W2110026815
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
670699
670624
-
Arg
TCT
[ENA]
¡û
>W2110095930
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
311397
311472
+
Arg
TCT
[ENA]
¡û
>W2110251068
JACSGS010000012
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
42085
42010
-
Arg
TCT
[ENA]
¡û
>W2110309559
JADDXW010000006
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
83
8
-
Arg
TCT
[ENA]
¡û
>W2110515289
JAFMPP010000020
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
62733
62658
-
Arg
TCT
[ENA]
¡û
>W2110515529
JAFMPY010000007
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
213462
213537
+
Arg
TCT
[ENA]
¡û
>W2110556740
JAGJCF010000025
Alphaproteobacteria
Jiella sp. KSK16Y-1 [JAGJCF]
212
137
-
Arg
TCT
[ENA]
¡û
>C211124103
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
1679760
1679835
+
Arg
TCT
-
¡û
>C211158626
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2060818
2060893
+
Arg
TCT
-
¡û
>W2110706387
JAIVMF010000002
Alphaproteobacteria
Stappia stellulata SN27-3 [JAIVMF]
305947
306022
+
Arg
TCT
[ENA]
¡û
>C211310752
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
2989104
2989029
-
Arg
TCT
-
¡û
>W2110717170
JAJAVB010000006
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
14294
14369
+
Arg
TCT
[ENA]
¡û
>C231260338
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
2264134
2264209
+
Arg
TCT
-
¡û
>W2110751835
NHSC01000018
Alphaproteobacteria
Afifella marina IM162 [NHSC]
36348
36423
+
Arg
TCT
[ENA]
¡û
>W2110754202
NRSE01000011
Alphaproteobacteria
Afifella marina DSM 2698 [NRSE]
36348
36423
+
Arg
TCT
[ENA]
¡û
>W2110754250
NRSF01000012
Alphaproteobacteria
Afifella marina IM 163 [NRSF]
36348
36423
+
Arg
TCT
[ENA]
¡û
>W2110754577
NSLC01000002
Alphaproteobacteria
Afifella sp. IM 167 [NSLC]
296858
296933
+
Arg
TCT
[ENA]
¡û
>C231550737
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
2349378
2349303
-
Arg
TCT
-
¡û
>C231554978
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
3301063
3301138
+
Arg
TCT
-
¡û
>W1511344058
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
1369675
1369750
+
Arg
TCT
[ENA]
¡û
>C161003855
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2368815
2368890
+
Arg
TCT
[Ensembl]
¡û
>W1610056507
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
129995
130070
+
Arg
TCT
[ENA]
¡û
>W1610056579
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
146173
146098
-
Arg
TCT
[ENA]
¡û
>W1610056611
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167792
167867
+
Arg
TCT
[ENA]
¡û
>W1610056680
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
517834
517759
-
Arg
TCT
[ENA]
¡û
>W1610056725
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25825
25900
+
Arg
TCT
[ENA]
¡û
>W1610056765
BBWN01000016
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
215606
215531
-
Arg
TCT
[ENA]
¡û
>W1610056851
BBWP01000016
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
198808
198733
-
Arg
TCT
[ENA]
¡û
>W1610056908
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
34146
34221
+
Arg
TCT
[ENA]
¡û
>W1610056950
BBWR01000009
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
143276
143351
+
Arg
TCT
[ENA]
¡û
>W1610057018
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
128746
128821
+
Arg
TCT
[ENA]
¡û
>W1610588133
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
102720
102645
-
Arg
TCT
[ENA]
¡û
>W1610588201
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
10242
10167
-
Arg
TCT
[ENA]
¡û
>W1610737653
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530863
530938
+
Arg
TCT
[ENA]
¡û
>W1610741010
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
723690
723615
-
Arg
TCT
[ENA]
¡û
>W1611066204
MBQE01000001
Alphaproteobacteria
Stappia indica [MBQE]
553690
553615
-
Arg
TCT
[ENA]
¡û
>W1611066250
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
560343
560268
-
Arg
TCT
[ENA]
¡û
>W1710015500
AQQS01000033
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
3060
2985
-
Arg
TCT
[ENA]
¡û
>W1710053206
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
129995
130070
+
Arg
TCT
[ENA]
¡û
>W1710053278
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
146173
146098
-
Arg
TCT
[ENA]
¡û
>W1710053310
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167792
167867
+
Arg
TCT
[ENA]
¡û
>W1710053379
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
517834
517759
-
Arg
TCT
[ENA]
¡û
>W1710053424
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25825
25900
+
Arg
TCT
[ENA]
¡û
>W1710053464
BBWN01000016
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
215606
215531
-
Arg
TCT
[ENA]
¡û
>W1710053550
BBWP01000016
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
198808
198733
-
Arg
TCT
[ENA]
¡û
>W1710053607
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
34146
34221
+
Arg
TCT
[ENA]
¡û
>W1710053649
BBWR01000009
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
143276
143351
+
Arg
TCT
[ENA]
¡û
>W1710053717
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
128746
128821
+
Arg
TCT
[ENA]
¡û
>W1710508149
FMVW01000010
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
36464
36539
+
Arg
TCT
[ENA]
¡û
>W1710524479
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
241607
241682
+
Arg
TCT
[ENA]
¡û
>W1710561259
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
133343
133268
-
Arg
TCT
[ENA]
¡û
>W1710588140
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
408476
408401
-
Arg
TCT
[ENA]
¡û
>W1710601586
FUXL01000001
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
84714
84789
+
Arg
TCT
[ENA]
¡û
>W1710707413
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
102720
102645
-
Arg
TCT
[ENA]
¡û
>W1710707481
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
10242
10167
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK