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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320945 (68 seq.)
>W1710875306
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530420
530496
+
Pro
TGG
[ENA]
¡û
>W1710878663
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
724174
724098
-
Pro
TGG
[ENA]
¡û
>W1711256868
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
624201
624125
-
Pro
TGG
[ENA]
¡û
>W1711501212
MKRJ01000008
Alphaproteobacteria
Rhizobiales bacterium 65-79 [MKRJ]
127828
127752
-
Pro
TGG
[ENA]
¡û
>W1711501433
MKRQ01000023
Alphaproteobacteria
Rhizobiales bacterium 68-8 [MKRQ]
2561
2485
-
Pro
TGG
[ENA]
¡û
>W131181009
ARNO01000019
Alphaproteobacteria
Woodsholea maritima DSM 17123 [ARNO]
167676
167752
+
Pro
TGG
[ENA]
¡û
>W131182175
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
14153
14229
+
Pro
TGG
[ENA]
¡û
>WENV180025164
FTIL01221122
[FTIL] metagenome; soil
191
115
-
Pro
TGG
[ENA]
¡û
>WENV170408691
CEUI01053228
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
720
644
-
Pro
TGG
[ENA]
¡û
>WENV170443789
CEUX01014159
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2626
2702
+
Pro
TGG
[ENA]
¡û
>W141702396
JMLL01000013
Alphaproteobacteria
Phyllobacterium sp. UNC302MFCol5.2 [JMLL]
3954
4030
+
Pro
TGG
[ENA]
¡û
>W1911798315
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
535822
535898
+
Pro
TGG
[ENA]
¡û
>W1810192904
PKMZ01000002
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
664856
664780
-
Pro
TGG
[ENA]
¡û
>W1810789384
QRGO01000004
Alphaproteobacteria
Undibacter mobilis GY_H [QRGO]
19180
19256
+
Pro
TGG
[ENA]
¡û
>W2010724729
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
430099
430175
+
Pro
TGG
[ENA]
¡û
>W2010724784
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
300144
300068
-
Pro
TGG
[ENA]
¡û
>W2010724820
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
430099
430175
+
Pro
TGG
[ENA]
¡û
>W2010725758
JACIEK010000008
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
159868
159944
+
Pro
TGG
[ENA]
¡û
>W2011343283
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
535822
535898
+
Pro
TGG
[ENA]
¡û
>W2011398709
RCIO01000005
Alphaproteobacteria
Mesorhizobium sp. Z1-4 [RCIO]
111349
111425
+
Pro
TGG
[ENA]
¡û
>W2011796842
UCKM01000019
Alphaproteobacteria
Rhizobiales bacterium [UCKM]
141083
141007
-
Pro
TGG
[ENA]
¡û
>W2011802714
UEHS01000022
Alphaproteobacteria
Rhizobiales bacterium [UEHS]
59917
59841
-
Pro
TGG
[ENA]
¡û
>W2012146685
VTWH01000002
Alphaproteobacteria
Aureimonas sp. CAU 1482 [VTWH]
754602
754678
+
Pro
TGG
[ENA]
¡û
>W2012216906
VZDO01000004
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
336630
336554
-
Pro
TGG
[ENA]
¡û
>W2012351107
WJIG01000002
Alphaproteobacteria
Phyllobacterium sp. SYP-B3895 [WJIG]
593491
593415
-
Pro
TGG
[ENA]
¡û
>W2110026237
BMIF01000001
Alphaproteobacteria
Nitratireductor aestuarii CGMCC 1.15320 [BMIF]
244370
244446
+
Pro
TGG
[ENA]
¡û
>W2110095929
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
310955
311031
+
Pro
TGG
[ENA]
¡û
>W2110515288
JAFMPP010000020
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
63314
63238
-
Pro
TGG
[ENA]
¡û
>W2110515528
JAFMPY010000007
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
212879
212955
+
Pro
TGG
[ENA]
¡û
>C211063898
CP045492
Alphaproteobacteria
Mesorhizobium sp. NBSH29 [CP045492]
2369125
2369049
-
Pro
TGG
-
¡û
>C211158625
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
2060366
2060442
+
Pro
TGG
-
¡û
>C231252912
CP088292
Alphaproteobacteria
Phyllobacterium sp. T1018 [CP088292]
1859081
1859157
+
Pro
TGG
-
¡û
>C231260337
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
2263682
2263758
+
Pro
TGG
-
¡û
>W2310026204
BSPE01000033
Alphaproteobacteria
Mesorhizobium albiziae NBRC 107164 [BSPE]
22974
22898
-
Pro
TGG
[ENA]
¡û
>W1511344057
JRFJ01000001
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
1369223
1369299
+
Pro
TGG
[ENA]
¡û
>C161003854
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2368353
2368429
+
Pro
TGG
[Ensembl]
¡û
>W1610056506
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
129533
129609
+
Pro
TGG
[ENA]
¡û
>W1610056578
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
146618
146542
-
Pro
TGG
[ENA]
¡û
>W1610056610
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167375
167451
+
Pro
TGG
[ENA]
¡û
>W1610056679
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
518296
518220
-
Pro
TGG
[ENA]
¡û
>W1610056724
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25364
25440
+
Pro
TGG
[ENA]
¡û
>W1610056907
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
33694
33770
+
Pro
TGG
[ENA]
¡û
>W1610056949
BBWR01000009
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
142821
142897
+
Pro
TGG
[ENA]
¡û
>W1610057017
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
128285
128361
+
Pro
TGG
[ENA]
¡û
>W1610057054
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
251859
251783
-
Pro
TGG
[ENA]
¡û
>W1610588132
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
103181
103105
-
Pro
TGG
[ENA]
¡û
>W1610588200
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
10703
10627
-
Pro
TGG
[ENA]
¡û
>W1610737652
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
530420
530496
+
Pro
TGG
[ENA]
¡û
>W1610741009
LMRD01000006
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
724174
724098
-
Pro
TGG
[ENA]
¡û
>W1611019893
LYSZ01000001
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
624201
624125
-
Pro
TGG
[ENA]
¡û
>W1710053205
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
129533
129609
+
Pro
TGG
[ENA]
¡û
>W1710053277
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
146618
146542
-
Pro
TGG
[ENA]
¡û
>W1710053309
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
167375
167451
+
Pro
TGG
[ENA]
¡û
>W1710053378
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
518296
518220
-
Pro
TGG
[ENA]
¡û
>W1710053423
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25364
25440
+
Pro
TGG
[ENA]
¡û
>W1710053606
BBWQ01000017
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
33694
33770
+
Pro
TGG
[ENA]
¡û
>W1710053648
BBWR01000009
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
142821
142897
+
Pro
TGG
[ENA]
¡û
>W1710053716
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
128285
128361
+
Pro
TGG
[ENA]
¡û
>W1710053753
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
251859
251783
-
Pro
TGG
[ENA]
¡û
>W1710524478
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
241190
241266
+
Pro
TGG
[ENA]
¡û
>W1710525514
FNJP01000003
Alphaproteobacteria
Phyllobacterium sp. YR620 [FNJP]
177222
177298
+
Pro
TGG
[ENA]
¡û
>W1710561258
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
133786
133710
-
Pro
TGG
[ENA]
¡û
>W1710565652
FORJ01000001
Alphaproteobacteria
Phyllobacterium sp. CL33Tsu [FORJ]
60543
60467
-
Pro
TGG
[ENA]
¡û
>W1710567100
FOSL01000017
Alphaproteobacteria
Mesorhizobium albiziae [FOSL]
23010
22934
-
Pro
TGG
[ENA]
¡û
>W1710588139
FQZC01000003
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
408928
408852
-
Pro
TGG
[ENA]
¡û
>W1710606268
FWXR01000002
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
231550
231474
-
Pro
TGG
[ENA]
¡û
>W1710707412
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
103181
103105
-
Pro
TGG
[ENA]
¡û
>W1710707480
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
10703
10627
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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