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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441310 (84 seq.)
>W1710899440
LNIY01000104
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
23135
23209
+
Thr
TGT
[ENA]
¡û
>W131186627
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
977402
977328
-
Thr
TGT
[ENA]
¡û
>W131226710
AUEO01000043
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
32683
32609
-
Thr
TGT
[ENA]
¡û
>W131230403
AUHO01000007
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
828714
828640
-
Thr
TGT
[ENA]
¡û
>W1711489161
MKIO01000029
Alphaproteobacteria
Xaviernesmea rhizosphaerae MH17 [MKIO]
251057
251131
+
Thr
TGT
[ENA]
¡û
>W1711501177
MKRH01000175
Alphaproteobacteria
Alphaproteobacteria bacterium 64-11 [MKRH]
1462
1388
-
Thr
TGT
[ENA]
¡û
>W1711704839
MSPX01000013
Alphaproteobacteria
Xaviernesmea rhizosphaerae [MSPX]
44428
44502
+
Thr
TGT
[ENA]
¡û
>W1712104771
NIPZ01000093
Alphaproteobacteria
Paracoccus yeei [NIPZ]
10970
11044
+
Thr
TGT
[ENA]
¡û
>C171057745
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
5087695
5087769
+
Thr
TGT
-
¡û
>C171107651
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
22897
22971
+
Thr
TGT
-
¡û
>WENV180020295
FTCZ01001293
[FTCZ] metagenome; soil
2389
2315
-
Thr
TGT
[ENA]
¡û
>WENV180020488
FTCZ01004739
[FTCZ] metagenome; soil
9065
8991
-
Thr
TGT
[ENA]
¡û
>WENV180584721
OCOJ01267441
[OCOJ] soil metagenome; soil
124
198
+
Thr
TGT
[ENA]
¡û
>WENV181169409
OEIV010002308
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6782
6856
+
Thr
TGT
[ENA]
¡û
>WENV181308201
OFIS01000658
[OFIS] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¡û
>WENV181311316
OFJB01000763
[OFJB] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¡û
>WENV181402389
OFTY01001028
[OFTY] sludge metagenome; sludge
4902
4976
+
Thr
TGT
[ENA]
¡û
>W141151404
AXBA01000067
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
5998
6072
+
Thr
TGT
[ENA]
¡û
>W141278838
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1025891
1025817
-
Thr
TGT
[ENA]
¡û
>WENV183731163
PJTS01014649
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
170
96
-
Thr
TGT
[ENA]
¡û
>WENV183743361
PJUJ01000669
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3350
3276
-
Thr
TGT
[ENA]
¡û
>WENV183744121
PJUK01000608
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
9132
9206
+
Thr
TGT
[ENA]
¡û
>WENV183745010
PJUL01001307
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3350
3276
-
Thr
TGT
[ENA]
¡û
>WENV170577133
FRDC01003531
[FRDC] freshwater metagenome; water
4758
4684
-
Thr
TGT
[ENA]
¡û
>C181099794
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
2591776
2591702
-
Thr
TGT
-
¡û
>C181190814
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
22867
22941
+
Thr
TGT
-
¡û
>C191040431
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
5066881
5066807
-
Thr
TGT
-
¡û
>C191073604
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1308876
1308802
-
Thr
TGT
-
¡û
>W141558884
JHWH01000028
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
50976
51050
+
Thr
TGT
[ENA]
¡û
>W1910006621
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
182555
182481
-
Thr
TGT
[ENA]
¡û
>W1910547089
FZNM01000014
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
19070
18996
-
Thr
TGT
[ENA]
¡û
>W1911397902
NWMQ01000002
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
116549
116475
-
Thr
TGT
[ENA]
¡û
>W1810177581
PJRQ01000016
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
3329
3255
-
Thr
TGT
[ENA]
¡û
>W1810177670
PJRS01000003
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
30550
30624
+
Thr
TGT
[ENA]
¡û
>W1810252004
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
244104
244030
-
Thr
TGT
[ENA]
¡û
>W1810543696
QDKP01000036
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
3265
3191
-
Thr
TGT
[ENA]
¡û
>W1810603424
QGLF01000005
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
435609
435535
-
Thr
TGT
[ENA]
¡û
>W2010074979
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
182555
182481
-
Thr
TGT
[ENA]
¡û
>W2010428850
FZNM01000014
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
19070
18996
-
Thr
TGT
[ENA]
¡û
>W2010493295
JAAKGT010000013
Alphaproteobacteria
Caulobacter sp. 602-2 [JAAKGT]
106043
106117
+
Thr
TGT
[ENA]
¡û
>W2010529099
JAAOHY010000004
Alphaproteobacteria
Paracoccus sp. 12-3 [JAAOHY]
246750
246824
+
Thr
TGT
[ENA]
¡û
>W2010683193
JACEMU010000016
Alphaproteobacteria
Paracoccus sp. S1E-3 [JACEMU]
248795
248721
-
Thr
TGT
[ENA]
¡û
>W2010699945
JACHFM010000001
Alphaproteobacteria
Amaricoccus macauensis DSM 101730 [JACHFM]
1077829
1077755
-
Thr
TGT
[ENA]
¡û
>W2010724782
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
245971
246045
+
Thr
TGT
[ENA]
¡û
>W2010724902
JACIDS010000001
Alphaproteobacteria
Kaistia hirudinis DSM 25966 [JACIDS]
1075169
1075243
+
Thr
TGT
[ENA]
¡û
>W2011134710
NWMQ01000002
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
116549
116475
-
Thr
TGT
[ENA]
¡û
>W2011555054
SELD02000035
Alphaproteobacteria
Paracoccus sp. JC 501 [SELD]
94726
94652
-
Thr
TGT
[ENA]
¡û
>W2011599925
SIRL01000014
Alphaproteobacteria
Paracoccus sediminis CMB17 [SIRL]
19096
19022
-
Thr
TGT
[ENA]
¡û
>W2011600663
SISK01000004
Alphaproteobacteria
Paracoccus sp. GY0581 [SISK]
51538
51464
-
Thr
TGT
[ENA]
¡û
>W2011649405
SNXM01000001
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [SNXM]
417580
417506
-
Thr
TGT
[ENA]
¡û
>W2011958302
UZWE01000025
Alphaproteobacteria
Paracoccus sp. M1-83 [UZWE]
5957
5883
-
Thr
TGT
[ENA]
¡û
>W2012065458
VJYZ01000001
Alphaproteobacteria
Paracoccus marinus NBRC 1000637 [VJYZ]
94326
94252
-
Thr
TGT
[ENA]
¡û
>W2012216905
VZDO01000004
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
337339
337266
-
Thr
TGT
[ENA]
¡û
>W2012317687
WEZG01000002
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
573459
573385
-
Thr
TGT
[ENA]
¡û
>W2012375431
WMBT01000001
Alphaproteobacteria
Paracoccus sp. YIM 132242 [WMBT]
339403
339477
+
Thr
TGT
[ENA]
¡û
>W2110026803
BMIQ01000001
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
619924
619997
+
Thr
TGT
[ENA]
¡û
>W2110027117
BMIV01000006
Alphaproteobacteria
Paracoccus acridae CGMCC 1.15419 [BMIV]
35236
35162
-
Thr
TGT
[ENA]
¡û
>W2110054522
BNCL01000005
Alphaproteobacteria
Paracoccus aerius KCTC 42845 [BNCL]
113211
113137
-
Thr
TGT
[ENA]
¡û
>W2110104224
CAJGAB010000009
Alphaproteobacteria
Paracoccus yeei Marseille-P2668 [CAJGAB]
54864
54790
-
Thr
TGT
[ENA]
¡û
>W2110235110
JACLBQ010000073
Alphaproteobacteria
Paracoccus yeei S/N-202-OC-B2 [JACLBQ]
63728
63654
-
Thr
TGT
[ENA]
¡û
>W2110447281
JAESHT010000005
Alphaproteobacteria
Paracoccus aerius KCTC 42845 [JAESHT]
113255
113181
-
Thr
TGT
[ENA]
¡û
>W2110459542
JAFBCY010000001
Alphaproteobacteria
Methylopila capsulata DSM 6130 [JAFBCY]
323747
323821
+
Thr
TGT
[ENA]
¡û
>W2110512782
JAFLRK010000052
Alphaproteobacteria
Paracoccus sp. wg2 [JAFLRK]
5571
5497
-
Thr
TGT
[ENA]
¡û
>W2110590360
JAHBGD010000006
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
10430
10356
-
Thr
TGT
[ENA]
¡û
>C211017733
AP024269
Alphaproteobacteria
Kaistia sp. 32K [AP024269]
2976293
2976367
+
Thr
TGT
-
¡û
>C211024559
AP024629
Alphaproteobacteria
Alphaproteobacteria bacterium SO-S41 [AP024629]
2081083
2081009
-
Thr
TGT
-
¡û
>C211176151
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
3476558
3476484
-
Thr
TGT
-
¡û
>C231595897
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
700205
700131
-
Thr
TGT
-
¡û
>C231620175
CP119318
Alphaproteobacteria
Kaistia sp. [CP119318]
3833470
3833544
+
Thr
TGT
-
¡û
>C241055276
CP041041
Alphaproteobacteria
Paracoccus sp. AK26 [CP041041]
1949038
1949112
+
Thr
TGT
-
¡û
>C241085791
CP044081
Alphaproteobacteria
Paracoccus yeei FDAARGOS_643 [CP044081]
1754196
1754122
-
Thr
TGT
-
¡û
>C241131977
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
987974
988048
+
Thr
TGT
-
¡û
>C241320926
CP134779
Alphaproteobacteria
Bosea sp. 685 [CP134779]
1998094
1998020
-
Thr
TGT
-
¡û
>W2310022642
BSFF01000002
Alphaproteobacteria
Methylopila capsulata VKM B-1606 [BSFF]
323779
323853
+
Thr
TGT
[ENA]
¡û
>W2310022931
BSFL01000003
Alphaproteobacteria
Methylopila turkensis VKM B-2748 [BSFL]
415400
415326
-
Thr
TGT
[ENA]
¡û
>W2310022970
BSFM01000013
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
10430
10356
-
Thr
TGT
[ENA]
¡û
>W2310026387
BSPN01000031
Alphaproteobacteria
Paracoccus marinus NBRC 100637 [BSPN]
19019
18945
-
Thr
TGT
[ENA]
¡û
>W1610056627
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15102
15176
+
Thr
TGT
[ENA]
¡û
>W1610759843
LNIY01000104
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
23135
23209
+
Thr
TGT
[ENA]
¡û
>W1710053326
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15102
15176
+
Thr
TGT
[ENA]
¡û
>W1710524482
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
295363
295289
-
Thr
TGT
[ENA]
¡û
>W1710564927
FOQV01000006
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
271016
270942
-
Thr
TGT
[ENA]
¡û
>W1710565842
FORN01000020
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
6514
6588
+
Thr
TGT
[ENA]
¡û
>W1710593770
FRXO01000003
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
40694
40768
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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