This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.474769 (21 seq.)
>W131218135
ATXK01000004
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
134208
134134
-
Glu
TTC
[ENA]
¡û
>w015769
AAPJ01000003
Alphaproteobacteria
Aurantimonas manganoxydans SI85-9A1 [AAPJ]
447862
447786
-
Glu
TTC
[ENA]
¡û
>WENV170269310
CERH01090481
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
550
476
-
Glu
TTC
[ENA]
¡û
>W2010437260
JAAAMG010000012
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
171538
171464
-
Glu
TTC
[ENA]
¡û
>W2010437354
JAAAMJ010000020
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
74825
74751
-
Glu
TTC
[ENA]
¡û
>W2010699365
JACHEY010000008
Alphaproteobacteria
Aurantimonas sp. DSM 15092 [JACHEY]
150009
150083
+
Glu
TTC
[ENA]
¡û
>W2010724783
JACIDP010000004
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
303458
303532
+
Glu
TTC
[ENA]
¡û
>W2010725839
JACIEM010000001
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
391858
391784
-
Glu
TTC
[ENA]
¡û
>W2011666564
SOZD01000002
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
117156
117230
+
Glu
TTC
[ENA]
¡û
>W2110251065
JACSGS010000012
Alphaproteobacteria
Aurantimonas sp. DM33-3 [JACSGS]
45923
45997
+
Glu
TTC
[ENA]
¡û
>W2110717171
JAJAVB010000006
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
9318
9244
-
Glu
TTC
[ENA]
¡û
>W1511568605
LAJF01000060
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
16543
16617
+
Glu
TTC
[ENA]
¡û
>W1511568606
LAJF01000060
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
16666
16740
+
Glu
CTC
[ENA]
¡û
>W1511568607
LAJF01000060
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
16891
16965
+
Glu
TTC
[ENA]
¡û
>W1610056612
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
164062
163988
-
Glu
TTC
[ENA]
¡û
>W1710015496
AQQS01000033
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
7820
7894
+
Glu
TTC
[ENA]
¡û
>W1710053311
BBWK01000027
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
164062
163988
-
Glu
TTC
[ENA]
¡û
>W1710524483
FNIT01000006
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
237876
237802
-
Glu
TTC
[ENA]
¡û
>W1710583822
FQVC01000013
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
95273
95199
-
Glu
TTC
[ENA]
¡û
>W1710583823
FQVC01000013
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
95150
95076
-
Glu
CTC
[ENA]
¡û
>W1710583824
FQVC01000013
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
94925
94851
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK