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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25025
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.528190 (27 seq.)
>W131182189
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
48912
48837
-
Lys
TTT
[ENA]
¡û
>SRA1016008
SRR023846.310698
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
225
150
-
Lys
TTT
[SRA]
>SRA1016161
SRR023846.375478
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
212
+
Lys
TTT
[SRA]
>SRA1016428
SRR023846.491699
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
137
212
+
Lys
TTT
[SRA]
>W2010724799
JACIDP010000015
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
17330
17405
+
Lys
TTT
[ENA]
¡û
>W2010725773
JACIEK010000023
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
2928
2853
-
Lys
TTT
[ENA]
¡û
>W2110095948
CAJCKW010000014
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
25712
25787
+
Lys
TTT
[ENA]
¡û
>C161003881
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
2402963
2402888
-
Lys
TTT
[Ensembl]
¡û
>W1610056445
BBWH01000001
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
121826
121901
+
Lys
TTT
[ENA]
¡û
>W1610056509
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
164143
164068
-
Lys
TTT
[ENA]
¡û
>W1610056630
BBWK01000075
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
36263
36338
+
Lys
TTT
[ENA]
¡û
>W1610056676
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
483689
483764
+
Lys
TTT
[ENA]
¡û
>W1610056727
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
60126
60051
-
Lys
TTT
[ENA]
¡û
>W1610057024
BBWS01000056
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
8489
8414
-
Lys
TTT
[ENA]
¡û
>W1610057051
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
217100
217175
+
Lys
TTT
[ENA]
¡û
>W1610588128
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
68413
68488
+
Lys
TTT
[ENA]
¡û
>W1610588152
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
238695
238770
+
Lys
TTT
[ENA]
¡û
>W1710053144
BBWH01000001
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
121826
121901
+
Lys
TTT
[ENA]
¡û
>W1710053208
BBWI01000020
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
164143
164068
-
Lys
TTT
[ENA]
¡û
>W1710053329
BBWK01000075
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
36263
36338
+
Lys
TTT
[ENA]
¡û
>W1710053375
BBWL01000041
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
483689
483764
+
Lys
TTT
[ENA]
¡û
>W1710053426
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
60126
60051
-
Lys
TTT
[ENA]
¡û
>W1710053723
BBWS01000056
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
8489
8414
-
Lys
TTT
[ENA]
¡û
>W1710053750
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
217100
217175
+
Lys
TTT
[ENA]
¡û
>W1710524499
FNIT01000020
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
259
184
-
Lys
TTT
[ENA]
¡û
>W1710707408
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
68413
68488
+
Lys
TTT
[ENA]
¡û
>W1710707432
LDQA01000001
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
238695
238770
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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