This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.130886 (98 seq.)
>W1710875345
LMOH01000029
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
31710
31624
-
Leu
CAA
[ENA]
¡û
>W1711179439
LWHQ01000043
Alphaproteobacteria
Methylobacterium platani [LWHQ]
14508
14594
+
Leu
CAA
[ENA]
¡û
>W131109477
APHV01000327
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
20688
20602
-
Leu
CAA
[ENA]
¡û
>WENV181227888
OFDN01070557
[OFDN] hot springs metagenome; Water
309
223
-
Leu
CAA
[ENA]
¡û
>WENV183727116
PJTO01005524
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
314
400
+
Leu
CAA
[ENA]
¡û
>C181063158
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2223123
2223037
-
Leu
CAA
-
¡û
>C181180109
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4197109
4197195
+
Leu
CAA
-
¡û
>C181180171
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
53040
53126
+
Leu
CAA
-
¡û
>W141520273
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
802871
802785
-
Leu
CAA
[ENA]
¡û
>C191087907
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
1434269
1434355
+
Leu
CAA
-
¡û
>C191088036
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
2487850
2487764
-
Leu
CAA
-
¡û
>C191088067
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
1040056
1040142
+
Leu
CAA
-
¡û
>W1910613033
LGQV01000021
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
11107
11193
+
Leu
CAA
[ENA]
¡û
>W1910613416
LGRK01000057
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
32221
32135
-
Leu
CAA
[ENA]
¡û
>W1911138075
NOWT01000002
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
251055
250969
-
Leu
CAA
[ENA]
¡û
>W1911768753
QXHE01000007
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
96901
96987
+
Leu
CAA
[ENA]
¡û
>W1911798347
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
285
199
-
Leu
CAA
[ENA]
¡û
>W1810079899
PELK01001591
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
7903
7989
+
Leu
CAA
[ENA]
¡û
>W1810222245
POQV01000005
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
139082
138996
-
Leu
CAA
[ENA]
¡û
>W1810223529
POTD01000004
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
138472
138386
-
Leu
CAA
[ENA]
¡û
>W1810226075
POWG01000003
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
164637
164723
+
Leu
CAA
[ENA]
¡û
>W1810692560
QLKQ01000008
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
41948
42034
+
Leu
CAA
[ENA]
¡û
>C151034780
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
497420
497334
-
Leu
CAA
[Ensembl]
¡û
>W2010493437
JAAKGV010000035
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
38179
38265
+
Leu
CAA
[ENA]
¡û
>W2010712687
JACHOO010000001
Alphaproteobacteria
Prosthecomicrobium pneumaticum DSM 16268 [JACHOO]
796692
796606
-
Leu
CAA
[ENA]
¡û
>W2010718079
JACHYN010000002
Alphaproteobacteria
Azospirillum sp. OGB3 [JACHYN]
186177
186091
-
Leu
CAA
[ENA]
¡û
>W2010724746
JACIDO010000005
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
189762
189848
+
Leu
CAA
[ENA]
¡û
>W2010724840
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
271535
271449
-
Leu
CAA
[ENA]
¡û
>W2010772635
LGQV01000021
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
11107
11193
+
Leu
CAA
[ENA]
¡û
>W2010773018
LGRK01000057
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
32221
32135
-
Leu
CAA
[ENA]
¡û
>W2011014317
NOWT01000002
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
251055
250969
-
Leu
CAA
[ENA]
¡û
>W2011279687
QOKV01000001
Alphaproteobacteria
Azospirillum brasilense ATCC 49958 [QOKV]
135170
135084
-
Leu
CAA
[ENA]
¡û
>W2011279770
QOKW01000009
Alphaproteobacteria
Roseomonas genomospecies 6 ATCC 49961 [QOKW]
165371
165285
-
Leu
CAA
[ENA]
¡û
>W2011326232
QXHE01000007
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
96901
96987
+
Leu
CAA
[ENA]
¡û
>W2011343315
QYRN01000006
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
285
199
-
Leu
CAA
[ENA]
¡û
>W2011652368
SNZR01000015
Alphaproteobacteria
Enterovirga rhinocerotis DSM 25903 [SNZR]
123043
123129
+
Leu
CAA
[ENA]
¡û
>W2011670607
SPKJ01000003
Alphaproteobacteria
Rhizobiales bacterium L72 [SPKJ]
62709
62795
+
Leu
CAA
[ENA]
¡û
>W2011678499
SRLB01000009
Alphaproteobacteria
Methylobacterium sp. 6HR-1 [SRLB]
197266
197180
-
Leu
CAA
[ENA]
¡û
>W2011980798
VDDA01000011
Alphaproteobacteria
Methylobacterium sp. 17Sr1-39 [VDDA]
96498
96412
-
Leu
CAA
[ENA]
¡û
>W2012011263
VEWN01000001
Alphaproteobacteria
Azospirillum brasilense Az19 [VEWN]
368169
368083
-
Leu
CAA
[ENA]
¡û
>W2012042605
VISK01000010
Alphaproteobacteria
Azospirillum brasilense Sp 7 [VISK]
951354
951268
-
Leu
CAA
[ENA]
¡û
>W2012043618
VITE01000007
Alphaproteobacteria
Azospirillum brasilense BR 12001 [VITE]
229761
229847
+
Leu
CAA
[ENA]
¡û
>W2012043671
VITF01000003
Alphaproteobacteria
Azospirillum brasilense BR 11796 [VITF]
237129
237215
+
Leu
CAA
[ENA]
¡û
>W2012043755
VITG01000003
Alphaproteobacteria
Azospirillum brasilense BR 11005 [VITG]
115366
115280
-
Leu
CAA
[ENA]
¡û
>W2012043816
VITH01000002
Alphaproteobacteria
Azospirillum brasilense BR 11650 [VITH]
372803
372717
-
Leu
CAA
[ENA]
¡û
>W2012043876
VITI01000001
Alphaproteobacteria
Azospirillum brasilense BR 11026 [VITI]
268129
268215
+
Leu
CAA
[ENA]
¡û
>W2012044686
VITX01000006
Alphaproteobacteria
Azospirillum brasilense BR 11002 [VITX]
311863
311949
+
Leu
CAA
[ENA]
¡û
>W2012131788
VSRJ01000089
Alphaproteobacteria
Azospirillum sp. Vi22 [VSRJ]
19238
19324
+
Leu
CAA
[ENA]
¡û
>W2012324349
WFKA01000046
Alphaproteobacteria
Azospirillum brasilense BR11017 [WFKA]
15340
15254
-
Leu
CAA
[ENA]
¡û
>W2012324440
WFKB01000752
Alphaproteobacteria
Azospirillum brasilense BR11019 [WFKB]
2615
2529
-
Leu
CAA
[ENA]
¡û
>W2012324503
WFKD01000195
Alphaproteobacteria
Azospirillum brasilense BR11649 [WFKD]
9882
9796
-
Leu
CAA
[ENA]
¡û
>W2012329115
WHOR01000073
Alphaproteobacteria
Azospirillum formosense CC-NFb-7 [WHOR]
12486
12572
+
Leu
CAA
[ENA]
¡û
>W2110019331
BMCT01000003
Alphaproteobacteria
Azorhizobium oxalatiphilum CCM 7897 [BMCT]
188768
188682
-
Leu
CAA
[ENA]
¡û
>W2110157044
JAAQRC010000001
Alphaproteobacteria
Methylobacterium sp. SyP6R [JAAQRC]
4091369
4091283
-
Leu
CAA
[ENA]
¡û
>W2110176575
JABEXZ010000001
Alphaproteobacteria
Azospirillum formosense Nfb7 [JABEXZ]
2364240
2364326
+
Leu
CAA
[ENA]
¡û
>W2110200998
JACCJY010000001
Alphaproteobacteria
Azospirillum sp. W712 [JACCJY]
498784
498698
-
Leu
CAA
[ENA]
¡û
>W2110278846
JACWCT010000125
Alphaproteobacteria
Methylobacterium ajmalii IF7SW-B2 [JACWCT]
1627
1713
+
Leu
CAA
[ENA]
¡û
>W2110278871
JACWCU010000009
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
1636
1722
+
Leu
CAA
[ENA]
¡û
>W2110371594
JADPXF010000003
Alphaproteobacteria
Azospirillum brasilense D7 [JADPXF]
117939
118025
+
Leu
CAA
[ENA]
¡û
>W2110438110
JAEPIV010000002
Alphaproteobacteria
Azospirillum sp. YIM DDC1 [JAEPIV]
263580
263666
+
Leu
CAA
[ENA]
¡û
>W2110590279
JAHBGB010000023
Alphaproteobacteria
Ancylobacter oerskovii CCM 7435 [JAHBGB]
88446
88360
-
Leu
CAA
[ENA]
¡û
>W2110590363
JAHBGD010000010
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [JAHBGD]
85396
85482
+
Leu
CAA
[ENA]
¡û
>W2110590454
JAHBGF010000016
Alphaproteobacteria
Ancylobacter sonchi VKM B-3145 [JAHBGF]
348182
348096
-
Leu
CAA
[ENA]
¡û
>C211014921
AP024145
Alphaproteobacteria
Methylobacterium indicum VL1 [AP024145]
3497122
3497208
+
Leu
CAA
-
¡û
>C211060229
CP043627
Alphaproteobacteria
Methylobacterium aquaticum BG2 [CP043627]
4726921
4726835
-
Leu
CAA
-
¡û
>W2110716450
JAJALI010000001
Alphaproteobacteria
Ancylobacter sp. Lp-2 [JAJALI]
292103
292189
+
Leu
CAA
[ENA]
¡û
>C231082785
CP059449
Alphaproteobacteria
Azospirillum brasilense 2020WEIHUA_K [CP059449]
1551136
1551050
-
Leu
CAA
-
¡û
>C231259884
CP089296
Alphaproteobacteria
Methylobacterium currus TP-3 [CP089295, CP089296]
318200
318114
-
Leu
CAA
-
¡û
>C231642877
CP121700
Alphaproteobacteria
Methylobacterium indicum JDJ13 [CP121700]
2520916
2520830
-
Leu
CAA
-
¡û
>C241038979
CP033312
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP033312, CP033313, CP033314, CP033316]
2676964
2677050
+
Leu
CAA
-
¡û
>C241039049
CP033318
Alphaproteobacteria
Azospirillum brasilense Cd [CP033318, CP033319, CP033320, CP033322]
2729499
2729585
+
Leu
CAA
-
¡û
>W2110781475
WFKC01000217
Alphaproteobacteria
Azospirillum brasilense BR11138 [WFKC]
9852
9766
-
Leu
CAA
[ENA]
¡û
>W2110781621
WFKF01000113
Alphaproteobacteria
Azospirillum brasilense BR11975 [WFKF]
10803
10889
+
Leu
CAA
[ENA]
¡û
>C241126443
CP047895
Alphaproteobacteria
Sphingomonas changnyeongensis C33 [CP047895]
2674510
2674424
-
Leu
CAA
-
¡û
>W2130017674
JACWCV010000723
Alphaproteobacteria
Methylobacterium ajmalii IIF4SW-B5 [JACWCV]
1595
1681
+
Leu
CAA
[ENA]
¡û
>W2310012997
BPQJ01000001
Alphaproteobacteria
Methylobacterium frigidaeris JCM 32048 [BPQJ]
145239
145325
+
Leu
CAA
[ENA]
¡û
>W2310022976
BSFM01000015
Alphaproteobacteria
Ancylobacter defluvii VKM B-2789 [BSFM]
85396
85482
+
Leu
CAA
[ENA]
¡û
>W1511507879
JXOD01000082
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
270
184
-
Leu
CAA
[ENA]
¡û
>W1511563231
LABX01000043
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
16005
15919
-
Leu
CAA
[ENA]
¡û
>W1511563284
LABY01000003
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
16422
16336
-
Leu
CAA
[ENA]
¡û
>W1511563372
LABZ01000145
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
46222
46308
+
Leu
CAA
[ENA]
¡û
>C121017714
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2681071
2681157
+
Leu
CAA
[Ensembl]
¡û
>C161001139
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1878280
1878366
+
Leu
CAA
[Ensembl]
¡û
>C161047394
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
781597
781511
-
Leu
CAA
[Ensembl]
¡û
>W1610056550
BBWJ01000006
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
94393
94479
+
Leu
CAA
[ENA]
¡û
>W1610590538
LDRM01000356
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
1661
1575
-
Leu
CAA
[ENA]
¡û
>W1610590602
LDRN01000323
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
1
87
+
Leu
CAA
[ENA]
¡û
>W1610737691
LMOH01000029
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
31710
31624
-
Leu
CAA
[ENA]
¡û
>W1610987340
LWHQ01000043
Alphaproteobacteria
Methylobacterium platani [LWHQ]
14508
14594
+
Leu
CAA
[ENA]
¡û
>W1710053249
BBWJ01000006
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
94393
94479
+
Leu
CAA
[ENA]
¡û
>W1710548832
FOEB01000012
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
157210
157124
-
Leu
CAA
[ENA]
¡û
>W1710560654
FONO01000004
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
54754
54840
+
Leu
CAA
[ENA]
¡û
>W1710561273
FOOA01000007
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
13744
13658
-
Leu
CAA
[ENA]
¡û
>W1710579055
FPCB01000021
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
86490
86576
+
Leu
CAA
[ENA]
¡û
>W1710626672
JPIR01000015
Alphaproteobacteria
Azospirillum brasilense [JPIR]
199300
199386
+
Leu
CAA
[ENA]
¡û
>W1710626748
JPIS01000018
Alphaproteobacteria
Azospirillum brasilense [JPIS]
137180
137094
-
Leu
CAA
[ENA]
¡û
>W1710709818
LDRM01000356
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
1661
1575
-
Leu
CAA
[ENA]
¡û
>W1710709882
LDRN01000323
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
1
87
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK