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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741276 (10 seq.)
>W1710875314
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
427912
427838
-
Val
CAC
[ENA]
¡û
>W1911798321
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
440603
440529
-
Val
CAC
[ENA]
¡û
>W2010724735
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
327502
327428
-
Val
CAC
[ENA]
¡û
>W2010724826
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
327502
327428
-
Val
CAC
[ENA]
¡û
>W2011343289
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
440603
440529
-
Val
CAC
[ENA]
¡û
>W2110095932
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
223549
223475
-
Val
CAC
[ENA]
¡û
>W1610056562
BBWJ01000019
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
50760
50686
-
Val
CAC
[ENA]
¡û
>W1610737660
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
427912
427838
-
Val
CAC
[ENA]
¡û
>W1710053261
BBWJ01000019
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
50760
50686
-
Val
CAC
[ENA]
¡û
>W1710561252
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
236383
236457
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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