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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.207416 (80 seq.)
>W1710875337
LMOH01000026
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
233346
233262
-
Leu
CAG
[ENA]
¡û
>W1710878678
LMRD01000008
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
300434
300350
-
Leu
CAG
[ENA]
¡û
>W1711135108
LUYO01000007
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
6533
6449
-
Leu
CAG
[ENA]
¡û
>W131182170
ARQE01000001
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
727507
727423
-
Leu
CAG
[ENA]
¡û
>W131229825
AUHB01000019
Alphaproteobacteria
Pleomorphomonas oryzae DSM 16300 [AUHB]
9931
9847
-
Leu
CAG
[ENA]
¡û
>W131235080
AULH01000002
Alphaproteobacteria
Pleomorphomonas koreensis DSM 23070 [AULH]
74003
74087
+
Leu
CAG
[ENA]
¡û
>WENV181167739
OEIU01066252
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1037
953
-
Leu
CAG
[ENA]
¡û
>WENV181312187
OFJB01053870
[OFJB] sludge metagenome; sludge
121
37
-
Leu
CAG
[ENA]
¡û
>WENV170714965
LNFM01120036
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
176
92
-
Leu
CAG
[ENA]
¡û
>W1911189479
NQVN01000014
Alphaproteobacteria
Pleomorphomonas sp. SVCO-16 [NQVN]
77947
78031
+
Leu
CAG
[ENA]
¡û
>W1911798348
QYRN01000007
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
9306
9390
+
Leu
CAG
[ENA]
¡û
>W1810173878
PJNW01000011
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
67714
67798
+
Leu
CAG
[ENA]
¡û
>W1810192911
PKMZ01000003
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
151976
151892
-
Leu
CAG
[ENA]
¡û
>SRA1015837
SRR023846.220540
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
70
154
+
Leu
CAG
[SRA]
>W2010437256
JAAAMG010000010
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
13642
13558
-
Leu
CAG
[ENA]
¡û
>W2010437327
JAAAMJ010000003
Alphaproteobacteria
Aurantimonas aggregata KCTC 52919 [JAAAMJ]
281874
281958
+
Leu
CAG
[ENA]
¡û
>W2010489497
JAAIYP010000038
Alphaproteobacteria
Magnetospirillum aberrantis SpK [JAAIYP]
319854
319770
-
Leu
CAG
[ENA]
¡û
>W2010534021
JAAOYR010000008
Alphaproteobacteria
Pleomorphomonas sp. SG524 [JAAOYR]
71335
71419
+
Leu
CAG
[ENA]
¡û
>W2010534117
JAAOYT010000008
Alphaproteobacteria
Pleomorphomonas sp. SG806 [JAAOYT]
148140
148056
-
Leu
CAG
[ENA]
¡û
>W2010724749
JACIDO010000005
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
454337
454253
-
Leu
CAG
[ENA]
¡û
>W2010724795
JACIDP010000006
DSM 25025
Aureimonas jatrophae L7-484 [JACIDP]
344285
344369
+
Leu
CAG
[ENA]
¡û
>W2010724837
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
6960
7044
+
Leu
CAG
[ENA]
¡û
>W2010725862
JACIEM010000006
Alphaproteobacteria
Aurantimonas endophytica DSM 103570 [JACIEM]
111533
111449
-
Leu
CAG
[ENA]
¡û
>W2011044958
NQVN01000014
Alphaproteobacteria
Pleomorphomonas sp. SVCO-16 [NQVN]
77947
78031
+
Leu
CAG
[ENA]
¡û
>W2011343316
QYRN01000007
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
9306
9390
+
Leu
CAG
[ENA]
¡û
>W2011658499
SOEA01000008
Alphaproteobacteria
Pleomorphomonas sp. CF100 [SOEA]
41287
41371
+
Leu
CAG
[ENA]
¡û
>W2011666569
SOZD01000002
Alphaproteobacteria
Jiella sp. CBS5Q-3 [SOZD]
619815
619731
-
Leu
CAG
[ENA]
¡û
>W2012141155
VTOM01000001
Alphaproteobacteria
Jiella sp. R10 [VTOM]
31984
31900
-
Leu
CAG
[ENA]
¡û
>W2012216927
VZDO01000026
Alphaproteobacteria
Aureimonas sp. YIM 132180 [VZDO]
25888
25804
-
Leu
CAG
[ENA]
¡û
>W2110026842
BMIQ01000012
Alphaproteobacteria
Aureimonas endophytica CGMCC 1.15367 [BMIQ]
66282
66198
-
Leu
CAG
[ENA]
¡û
>W2110095956
CAJCKW010000031
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
2620
2536
-
Leu
CAG
[ENA]
¡û
>W2110515548
JAFMPY010000025
Alphaproteobacteria
Jiella sp. MQZ13P-4 [JAFMPY]
51793
51709
-
Leu
CAG
[ENA]
¡û
>W2110556722
JAGJCF010000006
Alphaproteobacteria
Jiella sp. KSK16Y-1 [JAGJCF]
205735
205819
+
Leu
CAG
[ENA]
¡û
>C211124138
CP059692
Alphaproteobacteria
Aureimonas sp. LMG 31693 [CP059692]
173295
173211
-
Leu
CAG
-
¡û
>C211158662
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
701228
701144
-
Leu
CAG
-
¡û
>C211310766
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
136031
135947
-
Leu
CAG
-
¡û
>W2110717200
JAJAVB010000035
Alphaproteobacteria
Aurantimonas sp. VKM B-3413 [JAJAVB]
14004
13920
-
Leu
CAG
[ENA]
¡û
>C231260327
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
283450
283534
+
Leu
CAG
-
¡û
>C231269664
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
4052029
4051945
-
Leu
CAG
-
¡û
>C231550748
CP113520
Alphaproteobacteria
Aurantimonadaceae bacterium DY_R2A_6 [CP113520]
1227898
1227814
-
Leu
CAG
-
¡û
>C231554976
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
2602238
2602322
+
Leu
CAG
-
¡û
>W1511344085
JRFJ01000005
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
240544
240460
-
Leu
CAG
[ENA]
¡û
>C161003847
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
172294
172378
+
Leu
CAG
[Ensembl]
¡û
>W1610056532
BBWI01000027
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
61821
61737
-
Leu
CAG
[ENA]
¡û
>W1610056565
BBWJ01000030
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
44478
44562
+
Leu
CAG
[ENA]
¡û
>W1610056615
BBWK01000035
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
6908
6992
+
Leu
CAG
[ENA]
¡û
>W1610056661
BBWL01000031
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
44707
44791
+
Leu
CAG
[ENA]
¡û
>W1610056720
BBWM01000050
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
56217
56301
+
Leu
CAG
[ENA]
¡û
>W1610056721
BBWM01000050
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
56503
56587
+
Leu
CAG
[ENA]
¡û
>W1610056926
BBWQ01000024
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
63795
63879
+
Leu
CAG
[ENA]
¡û
>W1610056957
BBWR01000012
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
233292
233376
+
Leu
CAG
[ENA]
¡û
>W1610056976
BBWS01000006
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
182798
182714
-
Leu
CAG
[ENA]
¡û
>W1610056977
BBWS01000006
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
182512
182428
-
Leu
CAG
[ENA]
¡û
>W1610057033
BBWT01000002
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
22621
22705
+
Leu
CAG
[ENA]
¡û
>W1610588091
LDPZ01000001
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
98002
98086
+
Leu
CAG
[ENA]
¡û
>W1610588092
LDPZ01000001
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
98288
98372
+
Leu
CAG
[ENA]
¡û
>W1610588195
LDQA01000061
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
5068
5152
+
Leu
CAG
[ENA]
¡û
>W1610737683
LMOH01000026
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
233346
233262
-
Leu
CAG
[ENA]
¡û
>W1610741024
LMRD01000008
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
300434
300350
-
Leu
CAG
[ENA]
¡û
>W1610946228
LUYO01000007
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
6533
6449
-
Leu
CAG
[ENA]
¡û
>W1710015494
AQQS01000031
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
53780
53864
+
Leu
CAG
[ENA]
¡û
>W1710053231
BBWI01000027
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
61821
61737
-
Leu
CAG
[ENA]
¡û
>W1710053264
BBWJ01000030
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
44478
44562
+
Leu
CAG
[ENA]
¡û
>W1710053314
BBWK01000035
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
6908
6992
+
Leu
CAG
[ENA]
¡û
>W1710053360
BBWL01000031
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
44707
44791
+
Leu
CAG
[ENA]
¡û
>W1710053419
BBWM01000050
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
56217
56301
+
Leu
CAG
[ENA]
¡û
>W1710053420
BBWM01000050
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
56503
56587
+
Leu
CAG
[ENA]
¡û
>W1710053625
BBWQ01000024
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
63795
63879
+
Leu
CAG
[ENA]
¡û
>W1710053656
BBWR01000012
Alphaproteobacteria
Aureimonas frigidaquae [BBWR]
233292
233376
+
Leu
CAG
[ENA]
¡û
>W1710053675
BBWS01000006
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
182798
182714
-
Leu
CAG
[ENA]
¡û
>W1710053676
BBWS01000006
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
182512
182428
-
Leu
CAG
[ENA]
¡û
>W1710053732
BBWT01000002
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
22621
22705
+
Leu
CAG
[ENA]
¡û
>W1710524477
FNIT01000005
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
344512
344596
+
Leu
CAG
[ENA]
¡û
>W1710561268
FOOA01000005
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
7208
7292
+
Leu
CAG
[ENA]
¡û
>W1710569717
FOUQ01000004
Alphaproteobacteria
Pleomorphomonas diazotrophica [FOUQ]
67928
68012
+
Leu
CAG
[ENA]
¡û
>W1710588150
FQZC01000005
Alphaproteobacteria
Aureimonas altamirensis DSM 21988 [FQZC]
66609
66693
+
Leu
CAG
[ENA]
¡û
>W1710601603
FUXL01000005
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
324001
324085
+
Leu
CAG
[ENA]
¡û
>W1710707371
LDPZ01000001
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
98002
98086
+
Leu
CAG
[ENA]
¡û
>W1710707372
LDPZ01000001
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
98288
98372
+
Leu
CAG
[ENA]
¡û
>W1710707475
LDQA01000061
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
5068
5152
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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