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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.526645 (38 seq.)
>W1710785601
LJHZ01000098
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
7839
7914
+
Thr
CGT
[ENA]
¡û
>W1710856901
LLZS01000006
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
11166
11091
-
Thr
CGT
[ENA]
¡û
>W1710875316
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
75531
75456
-
Thr
CGT
[ENA]
¡û
>W1711385870
MEET01000008
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
118356
118281
-
Thr
CGT
[ENA]
¡û
>W1711387101
MEGG01000059
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
20570
20495
-
Thr
CGT
[ENA]
¡û
>W1711504842
MKUY01000005
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
336990
337065
+
Thr
CGT
[ENA]
¡û
>WENV181222856
OFDC01000404
[OFDC] hot springs metagenome; Water
3176
3251
+
Thr
CGT
[ENA]
¡û
>WENV181227066
OFDN01001430
[OFDN] hot springs metagenome; Water
5629
5704
+
Thr
CGT
[ENA]
¡û
>WENV170011191
APMI01048833
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
382
457
+
Thr
CGT
[ENA]
¡û
>W1910231968
FPEH01000021
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
6575
6500
-
Thr
CGT
[ENA]
¡û
>W1911798323
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
81228
81153
-
Thr
CGT
[ENA]
¡û
>W2010104503
BJYR01000021
Alphaproteobacteria
Novosphingobium sediminis NBRC 106119 [BJYR]
6316
6241
-
Thr
CGT
[ENA]
¡û
>W2010385511
FPEH01000021
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
6575
6500
-
Thr
CGT
[ENA]
¡û
>W2010459388
JAAFZT010000021
Alphaproteobacteria
Altererythrobacter sp. SALINAS58 [JAAFZT]
11965
11890
-
Thr
CGT
[ENA]
¡û
>W2010585608
JABAID010000009
Alphaproteobacteria
Novosphingobium sp. ERN07 [JABAID]
116094
116169
+
Thr
CGT
[ENA]
¡û
>W2010586949
JABASZ010000037
Alphaproteobacteria
Altererythrobacter sp. JL3514 [JABASZ]
80254
80179
-
Thr
CGT
[ENA]
¡û
>W2010711976
JACHOA010000001
Alphaproteobacteria
Novosphingobium taihuense DSM 17507 [JACHOA]
504142
504217
+
Thr
CGT
[ENA]
¡û
>W2010724737
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
2387
2312
-
Thr
CGT
[ENA]
¡û
>W2010724828
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
2387
2312
-
Thr
CGT
[ENA]
¡û
>W2010746096
JACLAW010000007
Alphaproteobacteria
Novosphingobium flavum NBRC 111647 [JACLAW]
269078
269003
-
Thr
CGT
[ENA]
¡û
>W2011343291
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
81228
81153
-
Thr
CGT
[ENA]
¡û
>W2011552209
SDSI01000001
Alphaproteobacteria
Erythrobacter sp. CFH 74456 [SDSI]
759623
759548
-
Thr
CGT
[ENA]
¡û
>W2011612906
SJSR01000001
Alphaproteobacteria
Erythrobacteraceae bacterium CFH 75059 [SJSR]
759623
759548
-
Thr
CGT
[ENA]
¡û
>W2011652689
SNZX01000003
Alphaproteobacteria
Novosphingobium sp. GV013 [SNZX]
656191
656266
+
Thr
CGT
[ENA]
¡û
>W2011653294
SOAI01000003
Alphaproteobacteria
Novosphingobium sp. GV002 [SOAI]
656043
656118
+
Thr
CGT
[ENA]
¡û
>W2011958265
UZWD01000023
Alphaproteobacteria
Devosia sp. M6-77 [UZWD]
27125
27200
+
Thr
CGT
[ENA]
¡û
>W2012081378
VLKJ01000001
Alphaproteobacteria
Novosphingobium taihuense CGMCC 1.3432 [VLKJ]
533762
533687
-
Thr
CGT
[ENA]
¡û
>W2012439599
WTYW01000006
Alphaproteobacteria
Altererythrobacter aurantiacus MCCC 1A09962 [WTYW]
85458
85533
+
Thr
CGT
[ENA]
¡û
>W2110095915
CAJCKW010000002
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
330011
329936
-
Thr
CGT
[ENA]
¡û
>W2110202878
JACDXU010000002
Alphaproteobacteria
Altererythrobacter sp. CC-YST694 [JACDXU]
681768
681843
+
Thr
CGT
[ENA]
¡û
>W2110710054
JAIZDA010000023
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
54891
54966
+
Thr
CGT
[ENA]
¡û
>C231287322
CP090960
Alphaproteobacteria
Devosiaceae bacterium LMO-2 [CP090960]
2440062
2439987
-
Thr
CGT
-
¡û
>W1610056570
BBWJ01000037
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
15225
15150
-
Thr
CGT
[ENA]
¡û
>W1610649407
LJHZ01000098
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
7839
7914
+
Thr
CGT
[ENA]
¡û
>W1610719282
LLZS01000006
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
11166
11091
-
Thr
CGT
[ENA]
¡û
>W1610737662
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
75531
75456
-
Thr
CGT
[ENA]
¡û
>W1710053269
BBWJ01000037
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
15225
15150
-
Thr
CGT
[ENA]
¡û
>W1710561278
FOOA01000011
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
130527
130602
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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