This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741277 (13 seq.)
>W1710875334
LMOH01000026
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
190882
190956
+
Val
GAC
[ENA]
¡û
>WENV180062896
MPLX02316598
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
2625
2699
+
Val
GAC
[ENA]
¡û
>WENV180084185
MPMD02154986
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
791
865
+
Val
GAC
[ENA]
¡û
>WENV170571622
FLOH01000236
[FLOH] marine metagenome; water
77308
77382
+
Val
GAC
[ENA]
¡û
>WENV170600970
FUWD010150481
[FUWD] metagenome; unknown
102
28
-
Val
GAC
[ENA]
¡û
>WENV170786810
MDSV01008731
[MDSV] marine metagenome; seawater
617
691
+
Val
GAC
[ENA]
¡û
>WENV170847525
MDTA01062670
[MDTA] marine metagenome; seawater
2648
2722
+
Val
GAC
[ENA]
¡û
>WENV170883656
MDTC01170028
[MDTC] marine metagenome; seawater
12002
12076
+
Val
GAC
[ENA]
¡û
>WENV170902984
MDTD01194836
[MDTD] marine metagenome; seawater
5570
5496
-
Val
GAC
[ENA]
¡û
>W2010724747
JACIDO010000005
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
413775
413849
+
Val
GAC
[ENA]
¡û
>W2010724841
JACIDQ010000005
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
47522
47448
-
Val
GAC
[ENA]
¡û
>W1610737680
LMOH01000026
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
190882
190956
+
Val
GAC
[ENA]
¡û
>W1710561270
FOOA01000005
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
47770
47696
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK