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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.875161 (8 seq.)
>W1710875303
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
244599
244672
+
Cys
GCA
[ENA]
¡û
>W131182185
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
313182
313109
-
Cys
GCA
[ENA]
¡û
>W2010724726
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
171403
171476
+
Cys
GCA
[ENA]
¡û
>W2010724817
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
171403
171476
+
Cys
GCA
[ENA]
¡û
>W1610057045
BBWT01000014
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
138890
138963
+
Cys
GCA
[ENA]
¡û
>W1610737649
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
244599
244672
+
Cys
GCA
[ENA]
¡û
>W1710053744
BBWT01000014
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
138890
138963
+
Cys
GCA
[ENA]
¡û
>W1710561255
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
392482
392409
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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