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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = GCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.55189 (7 seq.)
>W1710875315
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
339403
339314
-
Ser
GCT
[ENA]
¡û
>WENV183729588
PJTQ01080860
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
195
106
-
Ser
GCT
[ENA]
¡û
>WENV183739651
PJUE01050623
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
149
60
-
Ser
GCT
[ENA]
¡û
>W2010724736
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
239008
238919
-
Ser
GCT
[ENA]
¡û
>W2010724827
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
239008
238919
-
Ser
GCT
[ENA]
¡û
>W1610737661
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
339403
339314
-
Ser
GCT
[ENA]
¡û
>W1710561253
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
324877
324966
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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