This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.875162 (38 seq.)
>W1710875325
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
23767
23840
+
Gly
TCC
[ENA]
¡û
>W1711169190
LVYV01000008
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
94143
94216
+
Gly
TCC
[ENA]
¡û
>WENV183742916
PJUI01010092
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
81
154
+
Gly
TCC
[ENA]
¡û
>WENV170558071
CXWL01048511
[CXWL] groundwater metagenome; biofilm material
1434
1361
-
Gly
TCC
[ENA]
¡û
>W1910548961
FZOX01000003
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
18563
18490
-
Gly
TCC
[ENA]
¡û
>W1911798331
QYRN01000004
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
289694
289767
+
Gly
TCC
[ENA]
¡û
>W1810576949
QENW01000004
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
113166
113239
+
Gly
TCC
[ENA]
¡û
>W1810608959
QGTR01000001
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
282045
282118
+
Gly
TCC
[ENA]
¡û
>W1810672158
QJTF01000028
Alphaproteobacteria
Phyllobacterium leguminum ORS 1419 [QJTF]
34490
34563
+
Gly
TCC
[ENA]
¡û
>W1810784364
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
1162371
1162298
-
Gly
TCC
[ENA]
¡û
>SRA1014351
SRR023845.98930
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
222
+
Gly
TCC
[SRA]
>SRA1014879
SRR023845.359996
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
191
264
+
Gly
TCC
[SRA]
>SRA1014916
SRR023845.379572
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
209
136
-
Gly
TCC
[SRA]
>SRA1015198
SRR023845.495991
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
150
223
+
Gly
TCC
[SRA]
>SRA1015219
SRR023845.503079
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
222
+
Gly
TCC
[SRA]
>C151083107
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
2335021
2334948
-
Gly
TCC
[Ensembl]
¡û
>W2010430722
FZOX01000003
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
18563
18490
-
Gly
TCC
[ENA]
¡û
>W2010607368
JABMCJ010000087
Alphaproteobacteria
Tardiphaga robiniae LMG 26467 [JABMCJ]
69930
70003
+
Gly
TCC
[ENA]
¡û
>W2010724716
JACIDO010000001
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
880797
880870
+
Gly
TCC
[ENA]
¡û
>W2010724813
JACIDQ010000001
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
133038
132965
-
Gly
TCC
[ENA]
¡û
>W2011343299
QYRN01000004
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
289694
289767
+
Gly
TCC
[ENA]
¡û
>W2011354795
RAPX01000014
Alphaproteobacteria
Tardiphaga sp. YR296 [RAPX]
128434
128507
+
Gly
TCC
[ENA]
¡û
>W2011604987
SJFN01000065
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
9266
9339
+
Gly
TCC
[ENA]
¡û
>W2110021717
BMES01000002
Alphaproteobacteria
Alsobacter metallidurans CGMCC 1.12214 [BMES]
1249245
1249172
-
Gly
TCC
[ENA]
¡û
>C211048495
CP036498
Alphaproteobacteria
Rhodopseudomonas sp. SK50-23 [CP036498]
3846770
3846697
-
Gly
TCC
-
¡û
>C211082848
CP050292
Alphaproteobacteria
Tardiphaga robiniae 581 [CP050292]
2529306
2529233
-
Gly
TCC
-
¡û
>C231044621
CP036537
Alphaproteobacteria
Rhodopseudomonas boonkerdii NS23 [CP036537]
3746158
3746085
-
Gly
TCC
-
¡û
>C231248591
CP088008
Alphaproteobacteria
Tardiphaga sp. 37S4 [CP088008]
1686076
1686149
+
Gly
TCC
-
¡û
>C241346213
CP139027
Alphaproteobacteria
Tardiphaga sp. 42S5 [CP139027]
4894808
4894735
-
Gly
TCC
-
¡û
>W1511564326
LADQ01000159
Alphaproteobacteria
Hoeflea sp. BRH_c9 [LADQ]
328
401
+
Gly
TCC
[ENA]
¡û
>W1610056574
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
602
529
-
Gly
TCC
[ENA]
¡û
>W1610056629
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
8994
8921
-
Gly
TCC
[ENA]
¡û
>W1610737671
LMOH01000013
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
23767
23840
+
Gly
TCC
[ENA]
¡û
>W1610978985
LVYV01000008
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
94143
94216
+
Gly
TCC
[ENA]
¡û
>W1710053273
BBWJ01000039
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
602
529
-
Gly
TCC
[ENA]
¡û
>W1710053328
BBWK01000070
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
8994
8921
-
Gly
TCC
[ENA]
¡û
>W1710540688
FNWZ01000009
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
89203
89276
+
Gly
TCC
[ENA]
¡û
>W1710561249
FOOA01000001
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
2262
2189
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK