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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523948 (5 seq.)
>W1710878674
LMRD01000007
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
579268
579193
-
Ala
TGC
[ENA]
¡û
>W2010724757
JACIDO010000031
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
4323
4248
-
Ala
TGC
[ENA]
¡û
>W2010724848
JACIDQ010000031
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
4323
4248
-
Ala
TGC
[ENA]
¡û
>W1610741020
LMRD01000007
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
579268
579193
-
Ala
TGC
[ENA]
¡û
>W1710561288
FOOA01000050
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
2129
2054
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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