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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
DSM 25026
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.741275 (37 seq.)
>W1710875313
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
527115
527041
-
Glu
TTC
[ENA]
¡û
>W131182191
ARQE01000002
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
10677
10603
-
Glu
TTC
[ENA]
¡û
>W1911798320
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
532531
532457
-
Glu
TTC
[ENA]
¡û
>W2010724734
JACIDO010000002
Alphaproteobacteria
Aureimonas phyllosphaerae DSM 25024 [JACIDO]
426813
426739
-
Glu
TTC
[ENA]
¡û
>W2010724825
JACIDQ010000002
DSM 25026
Aureimonas phyllosphaerae L9-753 [JACIDQ]
426813
426739
-
Glu
TTC
[ENA]
¡û
>W2011343288
QYRN01000001
Alphaproteobacteria
Aureimonas sp. M2BS4Y-1 [QYRN]
532531
532457
-
Glu
TTC
[ENA]
¡û
>W2110095931
CAJCKW010000004
Alphaproteobacteria
Aureimonas sp. ME7 [CAJCKW]
307751
307677
-
Glu
TTC
[ENA]
¡û
>W1610056577
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
149905
149979
+
Glu
TTC
[ENA]
¡û
>W1610056728
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
22111
22037
-
Glu
TTC
[ENA]
¡û
>W1610056729
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
21890
21816
-
Glu
TTC
[ENA]
¡û
>W1610056730
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
21668
21594
-
Glu
TTC
[ENA]
¡û
>W1610057019
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
125029
124955
-
Glu
TTC
[ENA]
¡û
>W1610057020
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
124808
124734
-
Glu
TTC
[ENA]
¡û
>W1610057021
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
124586
124512
-
Glu
TTC
[ENA]
¡û
>W1610057053
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
255335
255409
+
Glu
TTC
[ENA]
¡û
>W1610588129
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106437
106511
+
Glu
TTC
[ENA]
¡û
>W1610588130
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106658
106732
+
Glu
TTC
[ENA]
¡û
>W1610588131
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106880
106954
+
Glu
TTC
[ENA]
¡û
>W1610588197
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
13958
14032
+
Glu
TTC
[ENA]
¡û
>W1610588198
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
14179
14253
+
Glu
TTC
[ENA]
¡û
>W1610588199
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
14401
14475
+
Glu
TTC
[ENA]
¡û
>W1610737659
LMOH01000001
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
527115
527041
-
Glu
TTC
[ENA]
¡û
>W1710053276
BBWJ01000044
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
149905
149979
+
Glu
TTC
[ENA]
¡û
>W1710053427
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
22111
22037
-
Glu
TTC
[ENA]
¡û
>W1710053428
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
21890
21816
-
Glu
TTC
[ENA]
¡û
>W1710053429
BBWM01000055
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
21668
21594
-
Glu
TTC
[ENA]
¡û
>W1710053718
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
125029
124955
-
Glu
TTC
[ENA]
¡û
>W1710053719
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
124808
124734
-
Glu
TTC
[ENA]
¡û
>W1710053720
BBWS01000055
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
124586
124512
-
Glu
TTC
[ENA]
¡û
>W1710053752
BBWT01000015
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
255335
255409
+
Glu
TTC
[ENA]
¡û
>W1710561251
FOOA01000002
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
137072
137146
+
Glu
TTC
[ENA]
¡û
>W1710707409
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106437
106511
+
Glu
TTC
[ENA]
¡û
>W1710707410
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106658
106732
+
Glu
TTC
[ENA]
¡û
>W1710707411
LDPZ01000024
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
106880
106954
+
Glu
TTC
[ENA]
¡û
>W1710707477
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
13958
14032
+
Glu
TTC
[ENA]
¡û
>W1710707478
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
14179
14253
+
Glu
TTC
[ENA]
¡û
>W1710707479
LDQA01000065
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
14401
14475
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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