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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = CCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340285 (5 seq.)
>WENV181407804
OGCH01000082
[OGCH] hot springs metagenome; hot springs
1
77
+
Arg
CCT
[ENA]
¢þ
>WENV181407833
OGCH01000110
[OGCH] hot springs metagenome; hot springs
1
77
+
Arg
CCT
[ENA]
¢þ
>W09113491
ABYR01000001
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
39143
39067
-
Arg
CCT
[ENA]
¡û
>C09104278
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
753054
753130
+
Arg
CCT
[Ensembl]
¡û
>C09104324
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
924489
924565
+
Arg
CCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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