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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339687 (5 seq.)
>WENV181407653
OGCH01000002
[OGCH] hot springs metagenome; hot springs
20879
20803
-
Pro
CGG
[ENA]
¢þ
>WENV181407741
OGCH01000042
[OGCH] hot springs metagenome; hot springs
64167
64243
+
Pro
CGG
[ENA]
¢þ
>W09113495
ABYR01000002
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
390322
390398
+
Pro
CGG
[ENA]
¡û
>C09104304
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1231006
1230930
-
Pro
CGG
[Ensembl]
¡û
>C09104352
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1411265
1411189
-
Pro
CGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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