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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95940 (4 seq.)
>WENV181407761
OGCH01000053
[OGCH] hot springs metagenome; hot springs
75114
75201
+
Leu
GAG
[ENA]
¢þ
>W09113517
ABYR01000003
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
219604
219691
+
Leu
GAG
[ENA]
¡û
>C09104292
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1015863
1015950
+
Leu
GAG
[Ensembl]
¡û
>C09104340
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1182891
1182978
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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