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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.527806 (7 seq.)
>WENV180012733
FMSI01016924
[FMSI] soil metagenome; Soil
48
123
+
Cys
GCA
[ENA]
¢þ
>WENV180037390
FVAA010990844
[FVAA] soil metagenome; Soil
106
31
-
Cys
GCA
[ENA]
¢þ
>WENV181407765
OGCH01000055
[OGCH] hot springs metagenome; hot springs
69616
69691
+
Cys
GCA
[ENA]
¢þ
>WENV181408026
OGCH01000399
[OGCH] hot springs metagenome; hot springs
23372
23297
-
Cys
GCA
[ENA]
¢þ
>W09113506
ABYR01000003
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
120997
121072
+
Cys
GCA
[ENA]
¡û
>C09104281
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
917244
917319
+
Cys
GCA
[Ensembl]
¡û
>C09104329
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1084280
1084355
+
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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