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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.698422 (6 seq.)
>WENV180012977
FMSI01036053
[FMSI] soil metagenome; Soil
73
1
-
Gly
GCC
[ENA]
¢þ
>WENV181407760
OGCH01000053
[OGCH] hot springs metagenome; hot springs
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV181407848
OGCH01000126
[OGCH] hot springs metagenome; hot springs
48767
48693
-
Gly
GCC
[ENA]
¢þ
>W09113516
ABYR01000003
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
144490
144564
+
Gly
GCC
[ENA]
¡û
>C09104291
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
940741
940815
+
Gly
GCC
[Ensembl]
¡û
>C09104339
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1107776
1107850
+
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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