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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.698417 (5 seq.)
>WENV181407652
OGCH01000002
[OGCH] hot springs metagenome; hot springs
20964
20890
-
Pro
GGG
[ENA]
¢þ
>WENV181407740
OGCH01000042
[OGCH] hot springs metagenome; hot springs
64082
64156
+
Pro
GGG
[ENA]
¢þ
>W09113494
ABYR01000002
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
390237
390311
+
Pro
GGG
[ENA]
¡û
>C09104303
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1231090
1231016
-
Pro
GGG
[Ensembl]
¡û
>C09104351
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1411350
1411276
-
Pro
GGG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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