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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163020 (4 seq.)
>WENV181407655
OGCH01000002
[OGCH] hot springs metagenome; hot springs
400
315
-
Tyr
GTA
[ENA]
¢þ
>W09113497
ABYR01000002
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
410752
410837
+
Tyr
GTA
[ENA]
¡û
>C09104306
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1210527
1210442
-
Tyr
GTA
[Ensembl]
¡û
>C09104354
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1390835
1390750
-
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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