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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Dictyoglomota
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.698806 (7 seq.)
>WENV180012984
FMSI01036668
[FMSI] soil metagenome; Soil
74
147
+
Asn
GTT
[ENA]
¢þ
>WENV180036571
FVAA010180291
[FVAA] soil metagenome; Soil
73
-1
-
Asn
GTT
[ENA]
¢þ
>WENV181407649
OGCH01000001
[OGCH] hot springs metagenome; hot springs
106502
106576
+
Asn
GTT
[ENA]
¢þ
>WENV181408115
OGCH01000601
[OGCH] hot springs metagenome; hot springs
12735
12809
+
Asn
GTT
[ENA]
¢þ
>W09113527
ABYR01000006
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [ABYR]
38713
38787
+
Asn
GTT
[ENA]
¡û
>C09104300
CP001146
Dictyoglomota
Dictyoglomus thermophilum H-6-12 H-6-12; ATCC 35947 [CP001146]
1649377
1649451
+
Asn
GTT
[Ensembl]
¡û
>C09104348
CP001251
Dictyoglomota
Dictyoglomus turgidum DSM 6724 [CP001251]
1838483
1838557
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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